RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00045019169	Gene ID	100624470	Accession	-
Symbol	ZFR	Alias	-	Full Name	zinc finger RNA binding protein
Status	Confidence	Length	94610 bases	Strand	Plus strand
Position	LUXT01053803.1 : 391523 - 486132	RNA binding domain	zf-met , DZF
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00045023045	zf-met	PF12874	7.2e-20	1
ENSSSCP00045023045	zf-met	PF12874	7.2e-20	2
ENSSSCP00045023045	zf-met	PF12874	7.2e-20	3
ENSSSCP00045023045	DZF	PF07528	5.9e-10	4
ENSSSCP00045022941	zf-met	PF12874	7.5e-20	1
ENSSSCP00045022941	zf-met	PF12874	7.5e-20	2
ENSSSCP00045022941	zf-met	PF12874	7.5e-20	3
ENSSSCP00045022941	DZF	PF07528	6.2e-10	4
ENSSSCP00045022841	zf-met	PF12874	7.8e-20	1
ENSSSCP00045022841	zf-met	PF12874	7.8e-20	2
ENSSSCP00045022841	zf-met	PF12874	7.8e-20	3
ENSSSCP00045022841	DZF	PF07528	6.2e-10	4
ENSSSCP00045022745	zf-met	PF12874	1.1e-19	1
ENSSSCP00045022745	zf-met	PF12874	1.1e-19	2
ENSSSCP00045022745	zf-met	PF12874	1.1e-19	3
ENSSSCP00045022745	DZF	PF07528	4.1e-69	4
ENSSSCP00045022631	DZF	PF07528	8.6e-26	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
ZFR-202	ENSSSCT00045032683	4828	128aa	ENSSSCP00045022631
ZFR-201	ENSSSCT00045032821	4406	1000aa	ENSSSCP00045022745
ZFR-203	ENSSSCT00045032946	8370	889aa	ENSSSCP00045022841
ZFR-204	ENSSSCT00045033097	5860	880aa	ENSSSCP00045022941
ZFR-205	ENSSSCT00045033248	14620	867aa	ENSSSCP00045023045

Gene Model

Click here to download ENSSSCG00045019169's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00045019169's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045019169	sus_scrofa_landrace	ENSSSCP00045030003	27.7718	20.3445	sus_scrofa_landrace	ENSSSCP00045022745	25.8	18.9
ENSSSCG00045019169	sus_scrofa_landrace	ENSSSCP00045005756	21.6638	11.2652	sus_scrofa_landrace	ENSSSCP00045022745	12.5	6.5
ENSSSCG00045019169	sus_scrofa_landrace	ENSSSCP00045040889	22.0447	10.5431	sus_scrofa_landrace	ENSSSCP00045022745	6.9	3.3
ENSSSCG00045019169	sus_scrofa_landrace	ENSSSCP00045019648	58.408	46.4677	sus_scrofa_landrace	ENSSSCP00045022745	58.7	46.7
ENSSSCG00045019169	sus_scrofa_landrace	ENSSSCP00045003548	37.9056	27.8761	sus_scrofa_landrace	ENSSSCP00045022745	25.7	18.9
ENSSSCG00045019169	sus_scrofa_landrace	ENSSSCP00045014054	21.0443	9.17722	sus_scrofa_landrace	ENSSSCP00045022745	13.3	5.8
ENSSSCG00045019169	sus_scrofa_landrace	ENSSSCP00045034148	20.177	10.2655	sus_scrofa_landrace	ENSSSCP00045022745	11.4	5.8
ENSSSCG00045019169	sus_scrofa_landrace	ENSSSCP00045029358	18.3794	8.3004	sus_scrofa_landrace	ENSSSCP00045022745	9.3	4.2
ENSSSCG00045019169	sus_scrofa_landrace	ENSSSCP00045000813	24.3169	11.4754	sus_scrofa_landrace	ENSSSCP00045022745	8.9	4.2
ENSSSCG00045019169	sus_scrofa_landrace	ENSSSCP00045042495	22.0779	10	sus_scrofa_landrace	ENSSSCP00045022745	17	7.7
ENSSSCG00045019169	sus_scrofa_landrace	ENSSSCP00045003772	21.2518	9.17031	sus_scrofa_landrace	ENSSSCP00045022745	14.6	6.3
ENSSSCG00045019169	sus_scrofa_landrace	ENSSSCP00045040870	41.5385	22.3077	sus_scrofa_landrace	ENSSSCP00045022745	16.2	8.7
ENSSSCG00045019169	sus_scrofa_landrace	ENSSSCP00045017463	18.1042	8.8813	sus_scrofa_landrace	ENSSSCP00045022745	21.2	10.4
ENSSSCG00045019169	sus_scrofa_landrace	ENSSSCP00045031480	24.1477	10.5114	sus_scrofa_landrace	ENSSSCP00045022745	17	7.4

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045019169	sus_scrofa_landrace	ENSSSCP00045022745	99.7	99.2	equus_caballus	ENSECAP00000067798	92.2294	91.7669
ENSSSCG00045019169	sus_scrofa_landrace	ENSSSCP00045022745	100	100	sus_scrofa	ENSSSCP00000019197	93.1966	93.1966
ENSSSCG00045019169	sus_scrofa_landrace	ENSSSCP00045022745	100	100	sus_scrofa_usmarc	ENSSSCP00070014536	93.1966	93.1966
ENSSSCG00045019169	sus_scrofa_landrace	ENSSSCP00045022745	100	100	sus_scrofa_rongchang	ENSSSCP00030018834	93.1966	93.1966
ENSSSCG00045019169	sus_scrofa_landrace	ENSSSCP00045022745	97.1	96.3	sus_scrofa_wuzhishan	ENSSSCP00005007316	91.7769	91.0208
ENSSSCG00045019169	sus_scrofa_landrace	ENSSSCP00045022745	100	100	sus_scrofa_jinhua	ENSSSCP00060017995	93.1966	93.1966
ENSSSCG00045019169	sus_scrofa_landrace	ENSSSCP00045022745	99.6	99.2	bos_taurus	ENSBTAP00000011072	92.8239	92.4511
ENSSSCG00045019169	sus_scrofa_landrace	ENSSSCP00045022745	100	100	sus_scrofa_bamei	ENSSSCP00050037086	93.1966	93.1966
ENSSSCG00045019169	sus_scrofa_landrace	ENSSSCP00045022745	99.5	98.9	ovis_aries_rambouillet	ENSOARP00020012842	92.7307	92.1715
ENSSSCG00045019169	sus_scrofa_landrace	ENSSSCP00045022745	100	100	sus_scrofa_berkshire	ENSSSCP00065006236	93.1966	93.1966
ENSSSCG00045019169	sus_scrofa_landrace	ENSSSCP00045022745	100	100	sus_scrofa_hampshire	ENSSSCP00035040193	93.1966	93.1966
ENSSSCG00045019169	sus_scrofa_landrace	ENSSSCP00045022745	100	100	sus_scrofa_meishan	ENSSSCP00040031632	100	100
ENSSSCG00045019169	sus_scrofa_landrace	ENSSSCP00045022745	100	100	sus_scrofa_tibetan	ENSSSCP00015037189	100	100
ENSSSCG00045019169	sus_scrofa_landrace	ENSSSCP00045022745	100	100	sus_scrofa_pietrain	ENSSSCP00055018063	100	100
ENSSSCG00045019169	sus_scrofa_landrace	ENSSSCP00045022745	100	100	sus_scrofa_largewhite	ENSSSCP00025021226	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression