RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00045018730	Gene ID	100627354	Accession	-
Symbol	CCDC25	Alias	-	Full Name	coiled-coil domain containing 25
Status	Confidence	Length	106707 bases	Strand	Plus strand
Position	LUXT01071834.1 : 2163517 - 2270223	RNA binding domain	NFACT-R_1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00045022169	NFACT-R_1	PF05670	7.6e-45	1
ENSSSCP00045022217	NFACT-R_1	PF05670	9.8e-45	1
ENSSSCP00045022266	NFACT-R_1	PF05670	1.2e-42	1
ENSSSCP00045022082	NFACT-R_1	PF05670	2.2e-39	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
CCDC25-201	ENSSSCT00045031877	808	201aa	ENSSSCP00045022082
CCDC25-202	ENSSSCT00045032009	3269	208aa	ENSSSCP00045022169
CCDC25-203	ENSSSCT00045032087	2112	237aa	ENSSSCP00045022217
CCDC25-204	ENSSSCT00045032161	752	210aa	ENSSSCP00045022266

Gene Model

Click here to download ENSSSCG00045018730's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00045018730's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045018730

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045018730	sus_scrofa_landrace	ENSSSCP00045022217	79.3249	75.5274	equus_caballus	ENSECAP00000064398	58.9342	56.1129
ENSSSCG00045018730	sus_scrofa_landrace	ENSSSCP00045022217	78.0591	74.2616	sus_scrofa	ENSSSCP00000036620	88.9423	84.6154
ENSSSCG00045018730	sus_scrofa_landrace	ENSSSCP00045022217	78.0591	74.2616	sus_scrofa_usmarc	ENSSSCP00070038638	88.9423	84.6154
ENSSSCG00045018730	sus_scrofa_landrace	ENSSSCP00045022217	79.7468	74.2616	sus_scrofa_rongchang	ENSSSCP00030004218	86.3014	80.3653
ENSSSCG00045018730	sus_scrofa_landrace	ENSSSCP00045022217	78.0591	74.2616	sus_scrofa_wuzhishan	ENSSSCP00005008584	88.9423	84.6154
ENSSSCG00045018730	sus_scrofa_landrace	ENSSSCP00045022217	78.0591	74.2616	sus_scrofa_jinhua	ENSSSCP00060035747	88.9423	84.6154
ENSSSCG00045018730	sus_scrofa_landrace	ENSSSCP00045022217	77.6371	73.8397	bos_taurus	ENSBTAP00000008601	70.7692	67.3077
ENSSSCG00045018730	sus_scrofa_landrace	ENSSSCP00045022217	78.0591	74.2616	sus_scrofa_bamei	ENSSSCP00050022388	88.9423	84.6154
ENSSSCG00045018730	sus_scrofa_landrace	ENSSSCP00045022217	77.2152	73.8397	ovis_aries_rambouillet	ENSOARP00020012863	87.9808	84.1346
ENSSSCG00045018730	sus_scrofa_landrace	ENSSSCP00045022217	70.0422	65.8228	ovis_aries_rambouillet	ENSOARP00020008294	86.4583	81.25
ENSSSCG00045018730	sus_scrofa_landrace	ENSSSCP00045022217	80.1688	74.6835	sus_scrofa_berkshire	ENSSSCP00065013201	86.758	80.8219
ENSSSCG00045018730	sus_scrofa_landrace	ENSSSCP00045022217	78.0591	74.2616	sus_scrofa_hampshire	ENSSSCP00035010622	88.9423	84.6154
ENSSSCG00045018730	sus_scrofa_landrace	ENSSSCP00045022217	74.2616	70.0422	sus_scrofa_meishan	ENSSSCP00040042189	83.8095	79.0476
ENSSSCG00045018730	sus_scrofa_landrace	ENSSSCP00045022217	91.5612	90.7173	sus_scrofa_tibetan	ENSSSCP00015010181	90.0415	89.2116
ENSSSCG00045018730	sus_scrofa_landrace	ENSSSCP00045022217	78.0591	74.2616	sus_scrofa_pietrain	ENSSSCP00055027407	88.9423	84.6154
ENSSSCG00045018730	sus_scrofa_landrace	ENSSSCP00045022217	78.0591	74.2616	sus_scrofa_largewhite	ENSSSCP00025031166	88.9423	84.6154

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression