RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00045016695	Gene ID	100525399	Accession	-
Symbol	AARS	Alias	-	Full Name	alanyl-tRNA synthetase 1
Status	Confidence	Length	23165 bases	Strand	Minus strand
Position	LUXT01026704.1 : 463868 - 487032	RNA binding domain	tRNA-synt_2c , tRNA_SAD , DHHA1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00045019616	tRNA-synt_2c	PF01411	1.5e-226	1
ENSSSCP00045019616	tRNA_SAD	PF07973	1.4e-17	2
ENSSSCP00045019616	DHHA1	PF02272	9.4e-19	3
ENSSSCP00045019725	tRNA-synt_2c	PF01411	1.9e-226	1
ENSSSCP00045019725	tRNA_SAD	PF07973	1.5e-17	2
ENSSSCP00045019725	DHHA1	PF02272	8.5e-19	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
AARS-201	ENSSSCT00045028379	3551	968aa	ENSSSCP00045019616
AARS-202	ENSSSCT00045028528	3508	1048aa	ENSSSCP00045019725

Gene Model

Click here to download ENSSSCG00045016695's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00045016695's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045016695	sus_scrofa_landrace	ENSSSCP00045024821	61.0837	43.7438	sus_scrofa_landrace	ENSSSCP00045019725	59.1603	42.3664
ENSSSCG00045016695	sus_scrofa_landrace	ENSSSCP00045008962	41.2621	23.0583	sus_scrofa_landrace	ENSSSCP00045019725	16.2214	9.06489

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045016695	sus_scrofa_landrace	ENSSSCP00045019725	94.3702	92.8435	equus_caballus	ENSECAP00000007094	97.3425	95.7677
ENSSSCG00045016695	sus_scrofa_landrace	ENSSSCP00045019725	92.271	92.271	sus_scrofa	ENSSSCP00000081193	97.8745	97.8745
ENSSSCG00045016695	sus_scrofa_landrace	ENSSSCP00045019725	99.9046	99.9046	sus_scrofa_usmarc	ENSSSCP00070005316	99.9046	99.9046
ENSSSCG00045016695	sus_scrofa_landrace	ENSSSCP00045019725	100	99.7137	sus_scrofa_rongchang	ENSSSCP00030028937	100	99.7137
ENSSSCG00045016695	sus_scrofa_landrace	ENSSSCP00045019725	92.1756	92.1756	sus_scrofa_wuzhishan	ENSSSCP00005029586	99.7934	99.7934
ENSSSCG00045016695	sus_scrofa_landrace	ENSSSCP00045019725	99.9046	99.9046	sus_scrofa_jinhua	ENSSSCP00060000502	99.9046	99.9046
ENSSSCG00045016695	sus_scrofa_landrace	ENSSSCP00045019725	90.8397	88.9313	bos_taurus	ENSBTAP00000026393	98.3471	96.281
ENSSSCG00045016695	sus_scrofa_landrace	ENSSSCP00045019725	92.271	91.9847	sus_scrofa_bamei	ENSSSCP00050043651	99.8967	99.5868
ENSSSCG00045016695	sus_scrofa_landrace	ENSSSCP00045019725	91.0305	88.7405	ovis_aries_rambouillet	ENSOARP00020021772	98.5537	96.0744
ENSSSCG00045016695	sus_scrofa_landrace	ENSSSCP00045019725	92.271	92.271	sus_scrofa_berkshire	ENSSSCP00065043554	99.8967	99.8967
ENSSSCG00045016695	sus_scrofa_landrace	ENSSSCP00045019725	92.1756	91.8893	sus_scrofa_hampshire	ENSSSCP00035005441	99.7934	99.4835
ENSSSCG00045016695	sus_scrofa_landrace	ENSSSCP00045019725	99.8092	99.6183	sus_scrofa_meishan	ENSSSCP00040005132	99.8092	99.6183
ENSSSCG00045016695	sus_scrofa_landrace	ENSSSCP00045019725	99.8092	99.6183	sus_scrofa_tibetan	ENSSSCP00015020445	99.8092	99.6183
ENSSSCG00045016695	sus_scrofa_landrace	ENSSSCP00045019725	99.8092	99.8092	sus_scrofa_pietrain	ENSSSCP00055000547	99.8092	99.8092
ENSSSCG00045016695	sus_scrofa_landrace	ENSSSCP00045019725	92.3664	92.0802	sus_scrofa_largewhite	ENSSSCP00025003112	100	99.6901

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression