RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00045016587	Gene ID	100521543	Accession	-
Symbol	ZFR2	Alias	-	Full Name	zinc finger RNA binding protein 2
Status	Confidence	Length	70437 bases	Strand	Minus strand
Position	LUXT01041961.1 : 46731 - 117167	RNA binding domain	zf-met , DZF
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00045019581	zf-met	PF12874	8.9e-18	1
ENSSSCP00045019581	zf-met	PF12874	8.9e-18	2
ENSSSCP00045019581	zf-met	PF12874	8.9e-18	3
ENSSSCP00045019581	DZF	PF07528	2.4e-40	4
ENSSSCP00045019510	zf-met	PF12874	1.1e-17	1
ENSSSCP00045019510	zf-met	PF12874	1.1e-17	2
ENSSSCP00045019510	zf-met	PF12874	1.1e-17	3
ENSSSCP00045019510	DZF	PF07528	3.3e-53	4
ENSSSCP00045019648	zf-met	PF12874	1.2e-17	1
ENSSSCP00045019648	zf-met	PF12874	1.2e-17	2
ENSSSCP00045019648	zf-met	PF12874	1.2e-17	3
ENSSSCP00045019648	DZF	PF07528	4.1e-62	4

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
ZFR2-201	ENSSSCT00045028225	5982	990aa	ENSSSCP00045019510
ZFR2-202	ENSSSCT00045028329	3820	927aa	ENSSSCP00045019581
ZFR2-203	ENSSSCT00045028423	4070	1005aa	ENSSSCP00045019648

Gene Model

Click here to download ENSSSCG00045016587's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00045016587's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045016587	sus_scrofa_landrace	ENSSSCP00045030003	27.3412	19.9139	sus_scrofa_landrace	ENSSSCP00045019648	25.2736	18.408
ENSSSCG00045016587	sus_scrofa_landrace	ENSSSCP00045005756	22.357	11.0919	sus_scrofa_landrace	ENSSSCP00045019648	12.8358	6.36816
ENSSSCG00045016587	sus_scrofa_landrace	ENSSSCP00045040889	21.7252	9.90415	sus_scrofa_landrace	ENSSSCP00045019648	6.76617	3.08458
ENSSSCG00045016587	sus_scrofa_landrace	ENSSSCP00045003548	35.3982	25.9587	sus_scrofa_landrace	ENSSSCP00045019648	23.8806	17.5124
ENSSSCG00045016587	sus_scrofa_landrace	ENSSSCP00045014054	21.2025	11.0759	sus_scrofa_landrace	ENSSSCP00045019648	13.3333	6.96517
ENSSSCG00045016587	sus_scrofa_landrace	ENSSSCP00045034148	21.0619	12.3894	sus_scrofa_landrace	ENSSSCP00045019648	11.8408	6.96517
ENSSSCG00045016587	sus_scrofa_landrace	ENSSSCP00045029358	18.1818	10.2767	sus_scrofa_landrace	ENSSSCP00045019648	9.15423	5.17413
ENSSSCG00045016587	sus_scrofa_landrace	ENSSSCP00045000813	24.8634	13.9344	sus_scrofa_landrace	ENSSSCP00045019648	9.05473	5.07463
ENSSSCG00045016587	sus_scrofa_landrace	ENSSSCP00045042495	21.6883	11.6883	sus_scrofa_landrace	ENSSSCP00045019648	16.6169	8.95522
ENSSSCG00045016587	sus_scrofa_landrace	ENSSSCP00045003772	20.0873	9.31587	sus_scrofa_landrace	ENSSSCP00045019648	13.7313	6.36816
ENSSSCG00045016587	sus_scrofa_landrace	ENSSSCP00045022745	58.7	46.7	sus_scrofa_landrace	ENSSSCP00045019648	58.408	46.4677
ENSSSCG00045016587	sus_scrofa_landrace	ENSSSCP00045040870	40.7692	23.0769	sus_scrofa_landrace	ENSSSCP00045019648	15.8209	8.95522
ENSSSCG00045016587	sus_scrofa_landrace	ENSSSCP00045017463	18.0188	10.6746	sus_scrofa_landrace	ENSSSCP00045019648	20.995	12.4378
ENSSSCG00045016587	sus_scrofa_landrace	ENSSSCP00045031480	23.4375	12.5	sus_scrofa_landrace	ENSSSCP00045019648	16.4179	8.75622

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045016587	sus_scrofa_landrace	ENSSSCP00045019648	73.6318	66.4677	equus_caballus	ENSECAP00000005277	78.3898	70.7627
ENSSSCG00045016587	sus_scrofa_landrace	ENSSSCP00045019648	100	100	sus_scrofa	ENSSSCP00000048686	100	100
ENSSSCG00045016587	sus_scrofa_landrace	ENSSSCP00045019648	94.9254	94.2289	sus_scrofa_usmarc	ENSSSCP00070044686	96.3636	95.6566
ENSSSCG00045016587	sus_scrofa_landrace	ENSSSCP00045019648	100	100	sus_scrofa_rongchang	ENSSSCP00030009194	100	100
ENSSSCG00045016587	sus_scrofa_landrace	ENSSSCP00045019648	64.1791	63.8806	sus_scrofa_wuzhishan	ENSSSCP00005039141	97.8756	97.4203
ENSSSCG00045016587	sus_scrofa_landrace	ENSSSCP00045019648	100	100	sus_scrofa_jinhua	ENSSSCP00060006002	100	100
ENSSSCG00045016587	sus_scrofa_landrace	ENSSSCP00045019648	77.7114	72.3383	bos_taurus	ENSBTAP00000066291	77.4802	72.123
ENSSSCG00045016587	sus_scrofa_landrace	ENSSSCP00045019648	100	100	sus_scrofa_bamei	ENSSSCP00050019812	100	100
ENSSSCG00045016587	sus_scrofa_landrace	ENSSSCP00045019648	77.0149	73.2338	ovis_aries_rambouillet	ENSOARP00020021699	82.9582	78.8853
ENSSSCG00045016587	sus_scrofa_landrace	ENSSSCP00045019648	100	100	sus_scrofa_berkshire	ENSSSCP00065042800	100	100
ENSSSCG00045016587	sus_scrofa_landrace	ENSSSCP00045019648	100	100	sus_scrofa_hampshire	ENSSSCP00035046514	100	100
ENSSSCG00045016587	sus_scrofa_landrace	ENSSSCP00045019648	100	100	sus_scrofa_meishan	ENSSSCP00040026996	100	100
ENSSSCG00045016587	sus_scrofa_landrace	ENSSSCP00045019648	99.9005	99.9005	sus_scrofa_tibetan	ENSSSCP00015016808	99.9005	99.9005
ENSSSCG00045016587	sus_scrofa_landrace	ENSSSCP00045019648	99.9005	99.9005	sus_scrofa_pietrain	ENSSSCP00055039610	99.9005	99.9005
ENSSSCG00045016587	sus_scrofa_landrace	ENSSSCP00045019648	99.9005	99.9005	sus_scrofa_largewhite	ENSSSCP00025016286	99.9005	99.9005

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression