RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00045013376	Gene ID		Accession	-
Symbol	RPS15A	Alias	-	Full Name	NA
Status	Confidence	Length	7388 bases	Strand	Minus strand
Position	LUXT01033044.1 : 359162 - 366549	RNA binding domain	Ribosomal_S8
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00045015764	Ribosomal_S8	PF00410	6e-22	1
ENSSSCP00045015747	Ribosomal_S8	PF00410	1.7e-17	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
RPS15A-201	ENSSSCT00045022823	1095	128aa	ENSSSCP00045015747
RPS15A-202	ENSSSCT00045022845	1305	130aa	ENSSSCP00045015764

Gene Model

Click here to download ENSSSCG00045013376's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00045013376's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045013376	sus_scrofa_landrace	ENSSSCP00045023181	87.8261	74.7826	sus_scrofa_landrace	ENSSSCP00045015764	77.6923	66.1538
ENSSSCG00045013376	sus_scrofa_landrace	ENSSSCP00045025506	90.3846	88.4615	sus_scrofa_landrace	ENSSSCP00045015764	36.1538	35.3846
ENSSSCG00045013376	sus_scrofa_landrace	ENSSSCP00045048729	94.6154	94.6154	sus_scrofa_landrace	ENSSSCP00045015764	94.6154	94.6154

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045013376	sus_scrofa_landrace	ENSSSCP00045015764	100	100	sus_scrofa	ENSSSCP00000041998	89.6552	89.6552
ENSSSCG00045013376	sus_scrofa_landrace	ENSSSCP00045015764	100	100	sus_scrofa_wuzhishan	ENSSSCP00005039639	100	100
ENSSSCG00045013376	sus_scrofa_landrace	ENSSSCP00045015764	100	100	sus_scrofa_berkshire	ENSSSCP00065036633	100	100
ENSSSCG00045013376	sus_scrofa_landrace	ENSSSCP00045015764	96.9231	96.9231	sus_scrofa_hampshire	ENSSSCP00035001336	98.4375	98.4375
ENSSSCG00045013376	sus_scrofa_landrace	ENSSSCP00045015764	100	100	sus_scrofa_pietrain	ENSSSCP00055042473	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression