RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00045009671	Gene ID	100515004	Accession	-
Symbol	MRPL50	Alias	-	Full Name	mitochondrial ribosomal protein L50
Status	Confidence	Length	6437 bases	Strand	Plus strand
Position	LUXT01024316.1 : 348884 - 355320	RNA binding domain	Ribosomal_L50
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00045011314	Ribosomal_L50	PF10501	2.6e-10	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
MRPL50-201	ENSSSCT00045016377	2629	159aa	ENSSSCP00045011314

Gene Model

Click here to download ENSSSCG00045009671's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00045009671's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045009671

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045009671	sus_scrofa_landrace	ENSSSCP00045011314	89.3082	84.2767	equus_caballus	ENSECAP00000056131	89.8734	84.8101
ENSSSCG00045009671	sus_scrofa_landrace	ENSSSCP00045011314	100	100	sus_scrofa	ENSSSCP00000020688	80.303	80.303
ENSSSCG00045009671	sus_scrofa_landrace	ENSSSCP00045011314	100	100	sus_scrofa_usmarc	ENSSSCP00070040214	80.303	80.303
ENSSSCG00045009671	sus_scrofa_landrace	ENSSSCP00045011314	100	100	sus_scrofa_rongchang	ENSSSCP00030036734	100	100
ENSSSCG00045009671	sus_scrofa_landrace	ENSSSCP00045011314	100	100	sus_scrofa_wuzhishan	ENSSSCP00005021549	100	100
ENSSSCG00045009671	sus_scrofa_landrace	ENSSSCP00045011314	100	100	sus_scrofa_jinhua	ENSSSCP00060014080	100	100
ENSSSCG00045009671	sus_scrofa_landrace	ENSSSCP00045011314	93.0818	85.5346	bos_taurus	ENSBTAP00000011798	93.0818	85.5346
ENSSSCG00045009671	sus_scrofa_landrace	ENSSSCP00045011314	84.9057	83.6478	sus_scrofa_bamei	ENSSSCP00050014154	75.419	74.3017
ENSSSCG00045009671	sus_scrofa_landrace	ENSSSCP00045011314	91.195	83.0189	ovis_aries_rambouillet	ENSOARP00020003777	91.195	83.0189
ENSSSCG00045009671	sus_scrofa_landrace	ENSSSCP00045011314	100	100	sus_scrofa_berkshire	ENSSSCP00065043196	100	100
ENSSSCG00045009671	sus_scrofa_landrace	ENSSSCP00045011314	100	100	sus_scrofa_hampshire	ENSSSCP00035035290	100	100
ENSSSCG00045009671	sus_scrofa_landrace	ENSSSCP00045011314	100	100	sus_scrofa_meishan	ENSSSCP00040021401	100	100
ENSSSCG00045009671	sus_scrofa_landrace	ENSSSCP00045011314	100	100	sus_scrofa_tibetan	ENSSSCP00015045376	100	100
ENSSSCG00045009671	sus_scrofa_landrace	ENSSSCP00045011314	100	100	sus_scrofa_pietrain	ENSSSCP00055029871	80.303	80.303
ENSSSCG00045009671	sus_scrofa_landrace	ENSSSCP00045011314	100	100	sus_scrofa_largewhite	ENSSSCP00025003439	80.303	80.303

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression