RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00045009230	Gene ID	100622613	Accession	-
Symbol	RPS9	Alias	-	Full Name	ribosomal protein S9
Status	Confidence	Length	8897 bases	Strand	Plus strand
Position	LUXT01008410.1 : 381312 - 390208	RNA binding domain	Ribosomal_S4 , S4
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00045010858	Ribosomal_S4	PF00163	2.6e-12	1
ENSSSCP00045010858	S4	PF01479	3.1e-05	2
ENSSSCP00045010949	Ribosomal_S4	PF00163	2.7e-12	1
ENSSSCP00045010949	S4	PF01479	5.7e-06	2
ENSSSCP00045010900	Ribosomal_S4	PF00163	3e-12	1
ENSSSCP00045010900	S4	PF01479	6.2e-06	2
ENSSSCP00045010919	Ribosomal_S4	PF00163	3.9e-12	1
ENSSSCP00045010919	S4	PF01479	3.4e-05	2
ENSSSCP00045010885	Ribosomal_S4	PF00163	4.8e-12	1
ENSSSCP00045010885	S4	PF01479	3.7e-11	2
ENSSSCP00045010976	Ribosomal_S4	PF00163	8.3e-07	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
RPS9-203	ENSSSCT00045015642	837	142aa	ENSSSCP00045010858
RPS9-202	ENSSSCT00045015682	771	194aa	ENSSSCP00045010885
RPS9-201	ENSSSCT00045015709	590	154aa	ENSSSCP00045010900
RPS9-204	ENSSSCT00045015735	1791	139aa	ENSSSCP00045010919
RPS9-205	ENSSSCT00045015778	1568	149aa	ENSSSCP00045010949
RPS9-206	ENSSSCT00045015818	330	79aa	ENSSSCP00045010976

Gene Model

Click here to download ENSSSCG00045009230's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00045009230's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045009230

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045009230	sus_scrofa_landrace	ENSSSCP00045010885	100	100	equus_caballus	ENSECAP00000058662	100	100
ENSSSCG00045009230	sus_scrofa_landrace	ENSSSCP00045010885	100	100	sus_scrofa	ENSSSCP00000022609	100	100
ENSSSCG00045009230	sus_scrofa_landrace	ENSSSCP00045010885	100	100	sus_scrofa_usmarc	ENSSSCP00070043428	100	100
ENSSSCG00045009230	sus_scrofa_landrace	ENSSSCP00045010885	100	100	sus_scrofa_rongchang	ENSSSCP00030018282	100	100
ENSSSCG00045009230	sus_scrofa_landrace	ENSSSCP00045010885	100	100	sus_scrofa_wuzhishan	ENSSSCP00005034943	100	100
ENSSSCG00045009230	sus_scrofa_landrace	ENSSSCP00045010885	100	100	sus_scrofa_jinhua	ENSSSCP00060041181	100	100
ENSSSCG00045009230	sus_scrofa_landrace	ENSSSCP00045010885	100	100	bos_taurus	ENSBTAP00000008502	100	100
ENSSSCG00045009230	sus_scrofa_landrace	ENSSSCP00045010885	100	100	sus_scrofa_bamei	ENSSSCP00050008997	100	100
ENSSSCG00045009230	sus_scrofa_landrace	ENSSSCP00045010885	100	100	ovis_aries_rambouillet	ENSOARP00020027717	100	100
ENSSSCG00045009230	sus_scrofa_landrace	ENSSSCP00045010885	100	100	sus_scrofa_berkshire	ENSSSCP00065014218	100	100
ENSSSCG00045009230	sus_scrofa_landrace	ENSSSCP00045010885	100	100	sus_scrofa_hampshire	ENSSSCP00035038486	100	100
ENSSSCG00045009230	sus_scrofa_landrace	ENSSSCP00045010885	100	100	sus_scrofa_meishan	ENSSSCP00040030586	100	100
ENSSSCG00045009230	sus_scrofa_landrace	ENSSSCP00045010885	100	100	sus_scrofa_tibetan	ENSSSCP00015040505	100	100
ENSSSCG00045009230	sus_scrofa_landrace	ENSSSCP00045010885	100	100	sus_scrofa_pietrain	ENSSSCP00055018238	100	100
ENSSSCG00045009230	sus_scrofa_landrace	ENSSSCP00045010885	100	100	sus_scrofa_largewhite	ENSSSCP00025039311	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression