RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00045008984	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	3463 bases	Strand	Minus strand
Position	LUXT01048889.1 : 71781 - 75243	RNA binding domain	Ribosomal_S19
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00045010572	Ribosomal_S19	PF00203	2.1e-25	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00045015216	444	147aa	ENSSSCP00045010572

Gene Model

Click here to download ENSSSCG00045008984's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00045008984's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045008984	sus_scrofa_landrace	ENSSSCP00045045046	57.2414	46.8966	sus_scrofa_landrace	ENSSSCP00045010572	56.4626	46.2585

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045008984	sus_scrofa_landrace	ENSSSCP00045010572	48.9796	40.1361	equus_caballus	ENSECAP00000046108	66.055	54.1284
ENSSSCG00045008984	sus_scrofa_landrace	ENSSSCP00045010572	100	100	sus_scrofa	ENSSSCP00000046277	100	100
ENSSSCG00045008984	sus_scrofa_landrace	ENSSSCP00045010572	89.1156	89.1156	sus_scrofa_usmarc	ENSSSCP00070011850	97.037	97.037
ENSSSCG00045008984	sus_scrofa_landrace	ENSSSCP00045010572	89.7959	87.7551	sus_scrofa_rongchang	ENSSSCP00030029114	86.2745	84.3137
ENSSSCG00045008984	sus_scrofa_landrace	ENSSSCP00045010572	89.7959	89.7959	sus_scrofa_wuzhishan	ENSSSCP00005006472	97.7778	97.7778
ENSSSCG00045008984	sus_scrofa_landrace	ENSSSCP00045010572	89.1156	87.0748	sus_scrofa_jinhua	ENSSSCP00060027416	88.5135	86.4865
ENSSSCG00045008984	sus_scrofa_landrace	ENSSSCP00045010572	89.1156	87.0748	sus_scrofa_bamei	ENSSSCP00050042658	85.6209	83.6601
ENSSSCG00045008984	sus_scrofa_landrace	ENSSSCP00045010572	89.7959	89.7959	sus_scrofa_berkshire	ENSSSCP00065025437	97.7778	97.7778
ENSSSCG00045008984	sus_scrofa_landrace	ENSSSCP00045010572	99.3197	97.2789	sus_scrofa_hampshire	ENSSSCP00035023422	99.3197	97.2789
ENSSSCG00045008984	sus_scrofa_landrace	ENSSSCP00045010572	89.1156	89.1156	sus_scrofa_meishan	ENSSSCP00040001655	97.037	97.037
ENSSSCG00045008984	sus_scrofa_landrace	ENSSSCP00045010572	87.7551	85.7143	sus_scrofa_tibetan	ENSSSCP00015037015	95.5556	93.3333
ENSSSCG00045008984	sus_scrofa_landrace	ENSSSCP00045010572	99.3197	97.9592	sus_scrofa_pietrain	ENSSSCP00055029489	99.3197	97.9592
ENSSSCG00045008984	sus_scrofa_landrace	ENSSSCP00045010572	99.3197	99.3197	sus_scrofa_largewhite	ENSSSCP00025035228	99.3197	99.3197

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression