RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00045008462	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	5853 bases	Strand	Minus strand
Position	LUXT01024619.1 : 417642 - 423494	RNA binding domain	Ribosomal_S4e , KOW , RS4NT , S4
Summary	N.A.

RNA binding domains (RBDs)

Search:

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00045009854	Ribosomal_S4e	PF00900	1.2e-37	1
ENSSSCP00045009854	KOW	PF00467	2e-05	2
ENSSSCP00045009854	RS4NT	PF08071	7.7e-21	3
ENSSSCP00045009854	S4	PF01479	1e-05	4
ENSSSCP00045009887	Ribosomal_S4e	PF00900	5.4e-38	1
ENSSSCP00045009887	KOW	PF00467	2.4e-05	2
ENSSSCP00045009887	RS4NT	PF08071	6.1e-21	3
ENSSSCP00045009887	S4	PF01479	1.2e-05	4
ENSSSCP00045009912	Ribosomal_S4e	PF00900	5.4e-38	1
ENSSSCP00045009912	KOW	PF00467	2.4e-05	2
ENSSSCP00045009912	RS4NT	PF08071	6.1e-21	3
ENSSSCP00045009912	S4	PF01479	1.2e-05	4

Showing 1 to 12 of 12 entries

Transcripts

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Search:

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00045014235	1405	242aa	ENSSSCP00045009854
-	ENSSSCT00045014288	1400	263aa	ENSSSCP00045009887
-	ENSSSCT00045014322	1373	263aa	ENSSSCP00045009912

Showing 1 to 3 of 3 entries

Gene Model

Click here to download ENSSSCG00045008462's gene model file

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00045008462's PPI file

Paralogs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045008462	sus_scrofa_landrace	ENSSSCP00045034534	80	74	sus_scrofa_landrace	ENSSSCP00045009887	45.6274	42.2053

Showing 1 to 1 of 1 entries

Orthologs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045008462	sus_scrofa_landrace	ENSSSCP00045009887	92.3954	88.5932	equus_caballus	ENSECAP00000075407	72.7545	69.7605
ENSSSCG00045008462	sus_scrofa_landrace	ENSSSCP00045009887	69.5817	63.8783	equus_caballus	ENSECAP00000077403	82.8054	76.0181
ENSSSCG00045008462	sus_scrofa_landrace	ENSSSCP00045009887	87.8327	87.4525	equus_caballus	ENSECAP00000023810	97.4684	97.0464
ENSSSCG00045008462	sus_scrofa_landrace	ENSSSCP00045009887	96.9582	93.1559	equus_caballus	ENSECAP00000002215	96.9582	93.1559
ENSSSCG00045008462	sus_scrofa_landrace	ENSSSCP00045009887	99.6198	99.6198	sus_scrofa	ENSSSCP00000066710	99.6198	99.6198
ENSSSCG00045008462	sus_scrofa_landrace	ENSSSCP00045009887	99.6198	99.6198	sus_scrofa_usmarc	ENSSSCP00070047907	99.6198	99.6198
ENSSSCG00045008462	sus_scrofa_landrace	ENSSSCP00045009887	99.6198	99.6198	sus_scrofa_rongchang	ENSSSCP00030031689	99.6198	99.6198
ENSSSCG00045008462	sus_scrofa_landrace	ENSSSCP00045009887	99.6198	99.6198	sus_scrofa_wuzhishan	ENSSSCP00005016112	99.6198	99.6198
ENSSSCG00045008462	sus_scrofa_landrace	ENSSSCP00045009887	100	100	sus_scrofa_jinhua	ENSSSCP00060017997	100	100
ENSSSCG00045008462	sus_scrofa_landrace	ENSSSCP00045009887	99.2395	98.8593	bos_taurus	ENSBTAP00000052226	99.2395	98.8593

Showing 1 to 10 of 27 entries

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Contents

Description
RBDs
Transcripts
Gene Model
PPI
Paralogs
Orthologs