Description

Ensembl ID ENSSSCG00045008462 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 5853 bases Strand Minus strand
Position LUXT01024619.1 : 417642 - 423494 RNA binding domain Ribosomal_S4e , KOW , RS4NT , S4
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSSSCP00045009887 Ribosomal_S4e PF00900 5.4e-38 1
ENSSSCP00045009887 KOW PF00467 2.4e-05 2
ENSSSCP00045009887 RS4NT PF08071 6.1e-21 3
ENSSSCP00045009887 S4 PF01479 1.2e-05 4
ENSSSCP00045009912 Ribosomal_S4e PF00900 5.4e-38 1
ENSSSCP00045009912 KOW PF00467 2.4e-05 2
ENSSSCP00045009912 RS4NT PF08071 6.1e-21 3
ENSSSCP00045009912 S4 PF01479 1.2e-05 4
ENSSSCP00045009854 Ribosomal_S4e PF00900 1.2e-37 1
ENSSSCP00045009854 KOW PF00467 2e-05 2
ENSSSCP00045009854 RS4NT PF08071 7.7e-21 3
ENSSSCP00045009854 S4 PF01479 1e-05 4

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSSSCT00045014235 1405 242aa ENSSSCP00045009854
- ENSSSCT00045014288 1400 263aa ENSSSCP00045009887
- ENSSSCT00045014322 1373 263aa ENSSSCP00045009912

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00045008462sus_scrofa_landraceENSSSCP000450345348074sus_scrofa_landraceENSSSCP0004500988745.627442.2053

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00045008462sus_scrofa_landraceENSSSCP0004500988792.395488.5932equus_caballusENSECAP0000007540772.754569.7605
ENSSSCG00045008462sus_scrofa_landraceENSSSCP0004500988769.581763.8783equus_caballusENSECAP0000007740382.805476.0181
ENSSSCG00045008462sus_scrofa_landraceENSSSCP0004500988787.832787.4525equus_caballusENSECAP0000002381097.468497.0464
ENSSSCG00045008462sus_scrofa_landraceENSSSCP0004500988796.958293.1559equus_caballusENSECAP0000000221596.958293.1559
ENSSSCG00045008462sus_scrofa_landraceENSSSCP0004500988799.619899.6198sus_scrofaENSSSCP0000006671099.619899.6198
ENSSSCG00045008462sus_scrofa_landraceENSSSCP0004500988799.619899.6198sus_scrofa_usmarcENSSSCP0007004790799.619899.6198
ENSSSCG00045008462sus_scrofa_landraceENSSSCP0004500988799.619899.6198sus_scrofa_rongchangENSSSCP0003003168999.619899.6198
ENSSSCG00045008462sus_scrofa_landraceENSSSCP0004500988799.619899.6198sus_scrofa_wuzhishanENSSSCP0000501611299.619899.6198
ENSSSCG00045008462sus_scrofa_landraceENSSSCP00045009887100100sus_scrofa_jinhuaENSSSCP00060017997100100
ENSSSCG00045008462sus_scrofa_landraceENSSSCP0004500988799.239598.8593bos_taurusENSBTAP0000005222699.239598.8593
ENSSSCG00045008462sus_scrofa_landraceENSSSCP0004500988795.817594.6768bos_taurusENSBTAP0000005716395.817594.6768
ENSSSCG00045008462sus_scrofa_landraceENSSSCP0004500988796.577995.8175bos_taurusENSBTAP0000005597496.577995.8175
ENSSSCG00045008462sus_scrofa_landraceENSSSCP0004500988798.098998.0989bos_taurusENSBTAP0000005173498.098998.0989
ENSSSCG00045008462sus_scrofa_landraceENSSSCP0004500988796.958294.6768bos_taurusENSBTAP0000005059496.958294.6768
ENSSSCG00045008462sus_scrofa_landraceENSSSCP0004500988799.619899.6198bos_taurusENSBTAP0000002502499.619899.6198
ENSSSCG00045008462sus_scrofa_landraceENSSSCP0004500988798.098998.0989bos_taurusENSBTAP0000005536698.473398.4733
ENSSSCG00045008462sus_scrofa_landraceENSSSCP0004500988710099.6198sus_scrofa_bameiENSSSCP0005003936410099.6198
ENSSSCG00045008462sus_scrofa_landraceENSSSCP0004500988795.05793.9164ovis_aries_rambouilletENSOARP0002002530995.05793.9164
ENSSSCG00045008462sus_scrofa_landraceENSSSCP0004500988797.718697.7186ovis_aries_rambouilletENSOARP0002001049596.254796.2547
ENSSSCG00045008462sus_scrofa_landraceENSSSCP0004500988799.239598.8593ovis_aries_rambouilletENSOARP0002003090699.239598.8593
ENSSSCG00045008462sus_scrofa_landraceENSSSCP0004500988799.619899.6198ovis_aries_rambouilletENSOARP0002003285799.619899.6198
ENSSSCG00045008462sus_scrofa_landraceENSSSCP00045009887100100sus_scrofa_berkshireENSSSCP00065005662100100
ENSSSCG00045008462sus_scrofa_landraceENSSSCP00045009887100100sus_scrofa_hampshireENSSSCP00035020943100100
ENSSSCG00045008462sus_scrofa_landraceENSSSCP0004500988799.619899.2395sus_scrofa_meishanENSSSCP0004002269299.619899.2395
ENSSSCG00045008462sus_scrofa_landraceENSSSCP0004500988799.619899.6198sus_scrofa_tibetanENSSSCP0001500018199.619899.6198
ENSSSCG00045008462sus_scrofa_landraceENSSSCP0004500988799.619899.6198sus_scrofa_pietrainENSSSCP0005500968299.619899.6198
ENSSSCG00045008462sus_scrofa_landraceENSSSCP0004500988799.619899.6198sus_scrofa_largewhiteENSSSCP0002504321699.619899.6198

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression