RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00040074902	Gene ID		Accession	-
Symbol	RPLP0	Alias	-	Full Name	Sus scrofa ribosomal protein lateral stalk subunit P0 (RPLP0), mRNA.
Status	Confidence	Length	4752 bases	Strand	Minus strand
Position	LUXQ01124710.1 : 130627 - 135378	RNA binding domain	Ribosomal_L10 , Ribosomal_60s
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040047105	Ribosomal_L10	PF00466	7.5e-21	1
ENSSSCP00040047105	Ribosomal_60s	PF00428	1.7e-20	2
ENSSSCP00040047121	Ribosomal_L10	PF00466	4.4e-12	1
ENSSSCP00040047121	Ribosomal_60s	PF00428	2e-20	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
RPLP0-202	ENSSSCT00040103718	919	256aa	ENSSSCP00040047105
RPLP0-201	ENSSSCT00040103741	1113	279aa	ENSSSCP00040047121

Gene Model

Click here to download ENSSSCG00040074902's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040074902's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040074902	sus_scrofa_meishan	ENSSSCP00040020740	28	15.3333	sus_scrofa_meishan	ENSSSCP00040047121	15.0538	8.24373
ENSSSCG00040074902	sus_scrofa_meishan	ENSSSCP00040046498	46.087	33.0435	sus_scrofa_meishan	ENSSSCP00040047121	18.9964	13.6201
ENSSSCG00040074902	sus_scrofa_meishan	ENSSSCP00040037369	35.9375	24.2188	sus_scrofa_meishan	ENSSSCP00040047121	16.4875	11.1111
ENSSSCG00040074902	sus_scrofa_meishan	ENSSSCP00040044715	42.9825	32.4561	sus_scrofa_meishan	ENSSSCP00040047121	17.5627	13.2616
ENSSSCG00040074902	sus_scrofa_meishan	ENSSSCP00040040331	40.7407	29.6296	sus_scrofa_meishan	ENSSSCP00040047121	15.7706	11.4695

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040074902	sus_scrofa_meishan	ENSSSCP00040047121	100	100	sus_scrofa_usmarc	ENSSSCP00070011404	87.7358	87.7358
ENSSSCG00040074902	sus_scrofa_meishan	ENSSSCP00040047121	87.4552	83.5125	sus_scrofa_tibetan	ENSSSCP00015029926	76.489	73.0407
ENSSSCG00040074902	sus_scrofa_meishan	ENSSSCP00040047121	100	100	sus_scrofa	ENSSSCP00000044506	87.7358	87.7358
ENSSSCG00040074902	sus_scrofa_meishan	ENSSSCP00040047121	94.2652	92.4731	sus_scrofa_wuzhishan	ENSSSCP00005045259	83.4921	81.9048
ENSSSCG00040074902	sus_scrofa_meishan	ENSSSCP00040047121	86.3799	82.4373	sus_scrofa_berkshire	ENSSSCP00065016947	74.8447	71.4286
ENSSSCG00040074902	sus_scrofa_meishan	ENSSSCP00040047121	98.5663	98.2079	ovis_aries_rambouillet	ENSOARP00020027098	86.478	86.1635
ENSSSCG00040074902	sus_scrofa_meishan	ENSSSCP00040047121	87.8136	83.871	sus_scrofa_jinhua	ENSSSCP00060031432	76.8025	73.3542
ENSSSCG00040074902	sus_scrofa_meishan	ENSSSCP00040047121	86.3799	82.4373	sus_scrofa_rongchang	ENSSSCP00030011754	74.8447	71.4286
ENSSSCG00040074902	sus_scrofa_meishan	ENSSSCP00040047121	86.3799	82.4373	sus_scrofa_pietrain	ENSSSCP00055021426	74.8447	71.4286
ENSSSCG00040074902	sus_scrofa_meishan	ENSSSCP00040047121	87.8136	83.871	sus_scrofa_largewhite	ENSSSCP00025028029	76.8025	73.3542
ENSSSCG00040074902	sus_scrofa_meishan	ENSSSCP00040047121	98.9247	98.5663	bos_taurus	ENSBTAP00000048183	86.7924	86.478
ENSSSCG00040074902	sus_scrofa_meishan	ENSSSCP00040047121	100	100	sus_scrofa_hampshire	ENSSSCP00035019844	87.7358	87.7358
ENSSSCG00040074902	sus_scrofa_meishan	ENSSSCP00040047121	86.3799	82.4373	sus_scrofa_bamei	ENSSSCP00050007997	74.8447	71.4286
ENSSSCG00040074902	sus_scrofa_meishan	ENSSSCP00040047121	86.3799	82.4373	sus_scrofa_landrace	ENSSSCP00045004702	74.8447	71.4286

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression