RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00040070402	Gene ID		Accession	-
Symbol	DKC1	Alias	-	Full Name	NA
Status	Confidence	Length	10703 bases	Strand	Plus strand
Position	LUXQ01105613.1 : 117276 - 127978	RNA binding domain	PUA , TruB_N , DKCLD
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040043089	PUA	PF01472	1.2e-17	1
ENSSSCP00040043089	TruB_N	PF01509	3.8e-21	2
ENSSSCP00040043089	DKCLD	PF08068	1.1e-31	3
ENSSSCP00040042963	PUA	PF01472	1.4e-17	1
ENSSSCP00040042963	TruB_N	PF01509	4e-21	2
ENSSSCP00040042963	DKCLD	PF08068	1.2e-31	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
DKC1-201	ENSSSCT00040096662	2334	521aa	ENSSSCP00040042963
DKC1-202	ENSSSCT00040096848	2853	504aa	ENSSSCP00040043089

Gene Model

Click here to download ENSSSCG00040070402's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040070402's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040070402

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040070402	sus_scrofa_meishan	ENSSSCP00040042963	96.737	96.1612	sus_scrofa_usmarc	ENSSSCP00070011180	95.6357	95.0664
ENSSSCG00040070402	sus_scrofa_meishan	ENSSSCP00040042963	100	100	sus_scrofa_tibetan	ENSSSCP00015018518	99.8084	99.8084
ENSSSCG00040070402	sus_scrofa_meishan	ENSSSCP00040042963	99.4242	99.2322	sus_scrofa	ENSSSCP00000013633	99.4242	99.2322
ENSSSCG00040070402	sus_scrofa_meishan	ENSSSCP00040042963	68.1382	66.2188	sus_scrofa_wuzhishan	ENSSSCP00005004864	91.9689	89.3782
ENSSSCG00040070402	sus_scrofa_meishan	ENSSSCP00040042963	100	100	sus_scrofa_berkshire	ENSSSCP00065029208	99.8084	99.8084
ENSSSCG00040070402	sus_scrofa_meishan	ENSSSCP00040042963	91.1708	87.524	ovis_aries_rambouillet	ENSOARP00020019831	88.29	84.7584
ENSSSCG00040070402	sus_scrofa_meishan	ENSSSCP00040042963	100	100	sus_scrofa_jinhua	ENSSSCP00060000849	100	100
ENSSSCG00040070402	sus_scrofa_meishan	ENSSSCP00040042963	100	100	sus_scrofa_rongchang	ENSSSCP00030010784	100	100
ENSSSCG00040070402	sus_scrofa_meishan	ENSSSCP00040042963	100	100	sus_scrofa_pietrain	ENSSSCP00055049143	100	100
ENSSSCG00040070402	sus_scrofa_meishan	ENSSSCP00040042963	91.5547	89.6353	equus_caballus	ENSECAP00000021150	95.5912	93.5872
ENSSSCG00040070402	sus_scrofa_meishan	ENSSSCP00040042963	100	100	sus_scrofa_largewhite	ENSSSCP00025031268	100	100
ENSSSCG00040070402	sus_scrofa_meishan	ENSSSCP00040042963	93.858	90.595	bos_taurus	ENSBTAP00000017339	96.6403	93.2806
ENSSSCG00040070402	sus_scrofa_meishan	ENSSSCP00040042963	100	100	sus_scrofa_hampshire	ENSSSCP00035037247	99.8084	99.8084
ENSSSCG00040070402	sus_scrofa_meishan	ENSSSCP00040042963	100	100	sus_scrofa_bamei	ENSSSCP00050009445	100	100
ENSSSCG00040070402	sus_scrofa_meishan	ENSSSCP00040042963	100	100	sus_scrofa_landrace	ENSSSCP00045028555	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression