RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00040067534	Gene ID		Accession	-
Symbol	TDRD10	Alias	-	Full Name	Sus scrofa tudor domain containing 10 (TDRD10), mRNA.
Status	Confidence	Length	53481 bases	Strand	Plus strand
Position	LUXQ01061012.1 : 879594 - 933074	RNA binding domain	RRM_1 , TUDOR
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040040788	RRM_1	PF00076	2.7e-09	1
ENSSSCP00040040788	TUDOR	PF00567	4e-09	2
ENSSSCP00040040996	RRM_1	PF00076	3.1e-09	1
ENSSSCP00040040996	TUDOR	PF00567	4.8e-09	2
ENSSSCP00040041074	RRM_1	PF00076	3.7e-09	1
ENSSSCP00040041074	TUDOR	PF00567	3.5e-09	2
ENSSSCP00040040862	RRM_1	PF00076	3.7e-09	1
ENSSSCP00040040862	TUDOR	PF00567	3.5e-09	2
ENSSSCP00040040919	RRM_1	PF00076	3.7e-09	1
ENSSSCP00040040919	TUDOR	PF00567	3.5e-09	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
TDRD10-201	ENSSSCT00040092416	1677	351aa	ENSSSCP00040040788
TDRD10-202	ENSSSCT00040092548	1643	331aa	ENSSSCP00040040862
TDRD10-203	ENSSSCT00040092675	1478	331aa	ENSSSCP00040040919
TDRD10-204	ENSSSCT00040092826	1131	376aa	ENSSSCP00040040996
TDRD10-205	ENSSSCT00040092970	1695	330aa	ENSSSCP00040041074

Gene Model

Click here to download ENSSSCG00040067534's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040067534's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040067534	sus_scrofa_meishan	ENSSSCP00040027253	6.55738	2.4108	sus_scrofa_meishan	ENSSSCP00040040996	18.0851	6.64894
ENSSSCG00040067534	sus_scrofa_meishan	ENSSSCP00040043749	11.0921	5.54607	sus_scrofa_meishan	ENSSSCP00040040996	34.5745	17.2872
ENSSSCG00040067534	sus_scrofa_meishan	ENSSSCP00040045738	12.275	5.72831	sus_scrofa_meishan	ENSSSCP00040040996	19.9468	9.30851
ENSSSCG00040067534	sus_scrofa_meishan	ENSSSCP00040001607	6.5683	3.66492	sus_scrofa_meishan	ENSSSCP00040040996	36.7021	20.4787
ENSSSCG00040067534	sus_scrofa_meishan	ENSSSCP00040029257	9.10747	3.91621	sus_scrofa_meishan	ENSSSCP00040040996	26.5957	11.4362

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040067534	sus_scrofa_meishan	ENSSSCP00040040996	99.2021	98.6702	sus_scrofa_usmarc	ENSSSCP00070047620	96.8831	96.3636
ENSSSCG00040067534	sus_scrofa_meishan	ENSSSCP00040040996	100	99.734	sus_scrofa_tibetan	ENSSSCP00015029852	100	99.734
ENSSSCG00040067534	sus_scrofa_meishan	ENSSSCP00040040996	85.6383	85.6383	sus_scrofa	ENSSSCP00000035874	97.281	97.281
ENSSSCG00040067534	sus_scrofa_meishan	ENSSSCP00040040996	99.734	99.734	sus_scrofa_wuzhishan	ENSSSCP00005006946	99.734	99.734
ENSSSCG00040067534	sus_scrofa_meishan	ENSSSCP00040040996	100	100	sus_scrofa_berkshire	ENSSSCP00065038757	100	100
ENSSSCG00040067534	sus_scrofa_meishan	ENSSSCP00040040996	82.7128	75.7979	ovis_aries_rambouillet	ENSOARP00020002557	88.604	81.1966
ENSSSCG00040067534	sus_scrofa_meishan	ENSSSCP00040040996	100	99.734	sus_scrofa_jinhua	ENSSSCP00060031660	100	99.734
ENSSSCG00040067534	sus_scrofa_meishan	ENSSSCP00040040996	100	100	sus_scrofa_rongchang	ENSSSCP00030042683	100	100
ENSSSCG00040067534	sus_scrofa_meishan	ENSSSCP00040040996	100	100	sus_scrofa_pietrain	ENSSSCP00055016304	100	100
ENSSSCG00040067534	sus_scrofa_meishan	ENSSSCP00040040996	87.766	80.8511	equus_caballus	ENSECAP00000020736	51.8868	47.7987
ENSSSCG00040067534	sus_scrofa_meishan	ENSSSCP00040040996	100	100	sus_scrofa_largewhite	ENSSSCP00025015791	100	100
ENSSSCG00040067534	sus_scrofa_meishan	ENSSSCP00040040996	87.234	80.3191	bos_taurus	ENSBTAP00000073824	85.8639	79.0576
ENSSSCG00040067534	sus_scrofa_meishan	ENSSSCP00040040996	100	99.734	sus_scrofa_hampshire	ENSSSCP00035048432	100	99.734
ENSSSCG00040067534	sus_scrofa_meishan	ENSSSCP00040040996	100	99.734	sus_scrofa_bamei	ENSSSCP00050010444	100	99.734
ENSSSCG00040067534	sus_scrofa_meishan	ENSSSCP00040040996	100	100	sus_scrofa_landrace	ENSSSCP00045046624	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression