RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00040067433	Gene ID		Accession	-
Symbol	TDRD3	Alias	-	Full Name	NA
Status	Confidence	Length	181755 bases	Strand	Plus strand
Position	LUXQ01129926.1 : 3144 - 184898	RNA binding domain	TUDOR , SMN
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040040725	TUDOR	PF00567	1.1e-10	1
ENSSSCP00040040725	SMN	PF06003	2.1e-08	2
ENSSSCP00040040779	TUDOR	PF00567	1.2e-10	1
ENSSSCP00040040779	SMN	PF06003	2.4e-08	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
TDRD3-201	ENSSSCT00040092278	2750	723aa	ENSSSCP00040040725
TDRD3-202	ENSSSCT00040092391	2672	760aa	ENSSSCP00040040779
TDRD3-203	ENSSSCT00040092519	4679	695aa	ENSSSCP00040040845

Gene Model

Click here to download ENSSSCG00040067433's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040067433's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040067433

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040067433	sus_scrofa_meishan	ENSSSCP00040040779	98.0263	98.0263	sus_scrofa_usmarc	ENSSSCP00070039302	100	100
ENSSSCG00040067433	sus_scrofa_meishan	ENSSSCP00040040779	76.0526	74.7368	sus_scrofa_tibetan	ENSSSCP00015025668	98.4668	96.7632
ENSSSCG00040067433	sus_scrofa_meishan	ENSSSCP00040040779	8.81579	7.23684	sus_scrofa_tibetan	ENSSSCP00015038776	56.3025	46.2185
ENSSSCG00040067433	sus_scrofa_meishan	ENSSSCP00040040779	98.0263	98.0263	sus_scrofa	ENSSSCP00000061758	100	100
ENSSSCG00040067433	sus_scrofa_meishan	ENSSSCP00040040779	96.5789	96.4474	sus_scrofa_wuzhishan	ENSSSCP00005019303	99.5929	99.4573
ENSSSCG00040067433	sus_scrofa_meishan	ENSSSCP00040040779	97.8947	97.8947	sus_scrofa_berkshire	ENSSSCP00065006017	100	100
ENSSSCG00040067433	sus_scrofa_meishan	ENSSSCP00040040779	93.4211	89.3421	ovis_aries_rambouillet	ENSOARP00020004158	87.8713	84.0347
ENSSSCG00040067433	sus_scrofa_meishan	ENSSSCP00040040779	100	99.8684	sus_scrofa_jinhua	ENSSSCP00060000262	100	99.8684
ENSSSCG00040067433	sus_scrofa_meishan	ENSSSCP00040040779	97.8947	97.8947	sus_scrofa_rongchang	ENSSSCP00030013328	100	100
ENSSSCG00040067433	sus_scrofa_meishan	ENSSSCP00040040779	94.6053	93.9474	sus_scrofa_pietrain	ENSSSCP00055010687	91.9437	91.3043
ENSSSCG00040067433	sus_scrofa_meishan	ENSSSCP00040040779	92.5	88.2895	equus_caballus	ENSECAP00000000532	89.4402	85.369
ENSSSCG00040067433	sus_scrofa_meishan	ENSSSCP00040040779	94.6053	93.9474	sus_scrofa_largewhite	ENSSSCP00025032317	91.9437	91.3043
ENSSSCG00040067433	sus_scrofa_meishan	ENSSSCP00040040779	93.9474	90.3947	bos_taurus	ENSBTAP00000066670	95.9677	92.3387
ENSSSCG00040067433	sus_scrofa_meishan	ENSSSCP00040040779	89.2105	88.4211	sus_scrofa_hampshire	ENSSSCP00035011643	97.554	96.6907
ENSSSCG00040067433	sus_scrofa_meishan	ENSSSCP00040040779	94.6053	93.9474	sus_scrofa_bamei	ENSSSCP00050028645	91.9437	91.3043
ENSSSCG00040067433	sus_scrofa_meishan	ENSSSCP00040040779	100	100	sus_scrofa_landrace	ENSSSCP00045039897	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression