RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00040066966	Gene ID		Accession	-
Symbol	MRTO4	Alias	-	Full Name	NA
Status	Confidence	Length	7044 bases	Strand	Minus strand
Position	LUXQ01098446.1 : 557621 - 564664	RNA binding domain	Ribosomal_L10
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040040366	Ribosomal_L10	PF00466	9.3e-20	1
ENSSSCP00040040434	Ribosomal_L10	PF00466	2.4e-06	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
MRTO4-201	ENSSSCT00040091531	2020	241aa	ENSSSCP00040040366
MRTO4-202	ENSSSCT00040091664	2323	258aa	ENSSSCP00040040434

Gene Model

Click here to download ENSSSCG00040066966's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040066966's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040066966

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040066966	sus_scrofa_meishan	ENSSSCP00040040434	75.5814	71.3178	sus_scrofa_usmarc	ENSSSCP00070049486	80.9129	76.3485
ENSSSCG00040066966	sus_scrofa_meishan	ENSSSCP00040040434	98.8372	98.8372	sus_scrofa_tibetan	ENSSSCP00015034529	98.4556	98.4556
ENSSSCG00040066966	sus_scrofa_meishan	ENSSSCP00040040434	75.5814	71.3178	sus_scrofa	ENSSSCP00000038369	80.9129	76.3485
ENSSSCG00040066966	sus_scrofa_meishan	ENSSSCP00040040434	75.1938	70.9302	sus_scrofa_wuzhishan	ENSSSCP00005010011	71.0623	67.033
ENSSSCG00040066966	sus_scrofa_meishan	ENSSSCP00040040434	75.5814	71.3178	sus_scrofa_berkshire	ENSSSCP00065027188	80.9129	76.3485
ENSSSCG00040066966	sus_scrofa_meishan	ENSSSCP00040040434	72.8682	66.2791	ovis_aries_rambouillet	ENSOARP00020009708	78.6611	71.5481
ENSSSCG00040066966	sus_scrofa_meishan	ENSSSCP00040040434	99.2248	98.8372	sus_scrofa_jinhua	ENSSSCP00060005163	98.8417	98.4556
ENSSSCG00040066966	sus_scrofa_meishan	ENSSSCP00040040434	99.2248	99.2248	sus_scrofa_rongchang	ENSSSCP00030018308	99.2248	99.2248
ENSSSCG00040066966	sus_scrofa_meishan	ENSSSCP00040040434	74.8062	70.5426	sus_scrofa_pietrain	ENSSSCP00055011107	80.4167	75.8333
ENSSSCG00040066966	sus_scrofa_meishan	ENSSSCP00040040434	72.4806	64.7287	equus_caballus	ENSECAP00000063063	76.3265	68.1633
ENSSSCG00040066966	sus_scrofa_meishan	ENSSSCP00040040434	99.6124	99.6124	sus_scrofa_largewhite	ENSSSCP00025037876	99.6124	99.6124
ENSSSCG00040066966	sus_scrofa_meishan	ENSSSCP00040040434	72.8682	66.2791	bos_taurus	ENSBTAP00000015861	78.6611	71.5481
ENSSSCG00040066966	sus_scrofa_meishan	ENSSSCP00040040434	100	100	sus_scrofa_hampshire	ENSSSCP00035042463	100	100
ENSSSCG00040066966	sus_scrofa_meishan	ENSSSCP00040040434	98.4496	98.4496	sus_scrofa_bamei	ENSSSCP00050048549	98.8327	98.8327
ENSSSCG00040066966	sus_scrofa_meishan	ENSSSCP00040040434	75.5814	70.9302	sus_scrofa_landrace	ENSSSCP00045013671	80.9129	75.9336

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression