| RBP Type |
N.A. |
| Diseases |
|
| Drug |
|
| Main interacting RNAs |
|
| Moonlighting functions |
|
| Localizations |
|
|
BulkPerturb-seq
|
|
| Ensembl ID | ENSSSCG00040064061 | Gene ID |
100049658 |
Accession |
- |
| Symbol |
RBM39 |
Alias |
- |
Full Name |
RNA binding motif protein 39 |
| Status |
Confidence |
Length |
32833 bases |
Strand |
Minus strand |
| Position |
LUXQ01048820.1 : 1023379 - 1056211 |
RNA binding domain |
RRM_1 , RBM39linker |
| Summary |
N.A. |
RNA binding domains (RBDs)
| Protein |
Domain |
Pfam ID |
E-value |
Domain number |
| ENSSSCP00040039373 |
RRM_1 |
PF00076 |
1.5e-41 |
1 |
| ENSSSCP00040039373 |
RRM_1 |
PF00076 |
1.5e-41 |
2 |
| ENSSSCP00040039373 |
RBM39linker |
PF15519 |
8.4e-27 |
3 |
| ENSSSCP00040039294 |
RRM_1 |
PF00076 |
2.1e-41 |
1 |
| ENSSSCP00040039294 |
RRM_1 |
PF00076 |
2.1e-41 |
2 |
| ENSSSCP00040039294 |
RBM39linker |
PF15519 |
3.9e-27 |
3 |
| ENSSSCP00040038912 |
RRM_1 |
PF00076 |
2.2e-41 |
1 |
| ENSSSCP00040038912 |
RRM_1 |
PF00076 |
2.2e-41 |
2 |
| ENSSSCP00040038912 |
RBM39linker |
PF15519 |
3.4e-27 |
3 |
| ENSSSCP00040038712 |
RRM_1 |
PF00076 |
2.2e-41 |
1 |
| ENSSSCP00040038712 |
RRM_1 |
PF00076 |
2.2e-41 |
2 |
| ENSSSCP00040038712 |
RBM39linker |
PF15519 |
4e-27 |
3 |
| ENSSSCP00040039211 |
RRM_1 |
PF00076 |
2.4e-41 |
1 |
| ENSSSCP00040039211 |
RRM_1 |
PF00076 |
2.4e-41 |
2 |
| ENSSSCP00040039211 |
RBM39linker |
PF15519 |
3.3e-28 |
3 |
RNA binding proteomes (RBPomes)
| Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
| Pubmed ID |
Title |
Author |
Time |
Journal |
| Name |
Transcript ID |
bp |
Protein |
Translation ID |
| RBM39-201 |
ENSSSCT00040088083 |
3775 |
530aa |
ENSSSCP00040038712 |
| RBM39-202 |
ENSSSCT00040088535 |
3884 |
497aa |
ENSSSCP00040038912 |
| RBM39-205 |
ENSSSCT00040089219 |
2712 |
513aa |
ENSSSCP00040039211 |
| RBM39-204 |
ENSSSCT00040089373 |
2897 |
525aa |
ENSSSCP00040039294 |
| RBM39-203 |
ENSSSCT00040089583 |
3027 |
481aa |
ENSSSCP00040039373 |
| RBM39-206 |
ENSSSCT00040089737 |
625 |
94aa |
ENSSSCP00040039443 |
| Pathway ID |
Pathway Name |
Source |
| | |
| ensgID |
Trait |
pValue |
Pubmed ID |
| ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
|---|
Protein-Protein Interaction (PPI)
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040027995 | 27.1003 | 16.2602 | sus_scrofa_meishan | ENSSSCP00040038712 | 18.8679 | 11.3208 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040027863 | 26.8493 | 15.6164 | sus_scrofa_meishan | ENSSSCP00040038712 | 18.4906 | 10.7547 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040034253 | 27.2727 | 14.1711 | sus_scrofa_meishan | ENSSSCP00040038712 | 19.2453 | 10 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040027763 | 30.2817 | 14.4366 | sus_scrofa_meishan | ENSSSCP00040038712 | 16.2264 | 7.73585 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040015551 | 21.4599 | 11.9708 | sus_scrofa_meishan | ENSSSCP00040038712 | 27.7358 | 15.4717 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040019254 | 21.2014 | 11.3074 | sus_scrofa_meishan | ENSSSCP00040038712 | 22.6415 | 12.0755 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040029712 | 32.9032 | 18.0645 | sus_scrofa_meishan | ENSSSCP00040038712 | 9.62264 | 5.28302 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040018608 | 33.5484 | 18.0645 | sus_scrofa_meishan | ENSSSCP00040038712 | 9.81132 | 5.28302 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040031394 | 32.967 | 15.3846 | sus_scrofa_meishan | ENSSSCP00040038712 | 11.3208 | 5.28302 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040048110 | 32.0513 | 17.3077 | sus_scrofa_meishan | ENSSSCP00040038712 | 9.43396 | 5.09434 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040022849 | 17.6796 | 9.53039 | sus_scrofa_meishan | ENSSSCP00040038712 | 24.1509 | 13.0189 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040009567 | 20.3647 | 10.6383 | sus_scrofa_meishan | ENSSSCP00040038712 | 12.6415 | 6.60377 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040031192 | 41.0714 | 23.2143 | sus_scrofa_meishan | ENSSSCP00040038712 | 8.67924 | 4.90566 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040026546 | 32.2767 | 17.5793 | sus_scrofa_meishan | ENSSSCP00040038712 | 21.1321 | 11.5094 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040008360 | 30.8571 | 16.5714 | sus_scrofa_meishan | ENSSSCP00040038712 | 20.3774 | 10.9434 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040031551 | 23.2645 | 12.1951 | sus_scrofa_meishan | ENSSSCP00040038712 | 23.3962 | 12.2642 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040038789 | 20.679 | 11.4198 | sus_scrofa_meishan | ENSSSCP00040038712 | 12.6415 | 6.98113 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040035241 | 24.5509 | 12.8743 | sus_scrofa_meishan | ENSSSCP00040038712 | 15.4717 | 8.11321 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040022723 | 21.1382 | 10.5691 | sus_scrofa_meishan | ENSSSCP00040038712 | 9.81132 | 4.90566 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040016186 | 18.8172 | 9.67742 | sus_scrofa_meishan | ENSSSCP00040038712 | 6.60377 | 3.39623 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040001006 | 28.0423 | 15.0794 | sus_scrofa_meishan | ENSSSCP00040038712 | 20 | 10.7547 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040017487 | 74.5958 | 62.5866 | sus_scrofa_meishan | ENSSSCP00040038712 | 60.9434 | 51.1321 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040041067 | 24.3626 | 13.5977 | sus_scrofa_meishan | ENSSSCP00040038712 | 16.2264 | 9.0566 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040041961 | 26.5464 | 15.2062 | sus_scrofa_meishan | ENSSSCP00040038712 | 19.434 | 11.1321 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040019675 | 36.4706 | 22.3529 | sus_scrofa_meishan | ENSSSCP00040038712 | 11.6981 | 7.16981 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040024901 | 26.6129 | 15.0538 | sus_scrofa_meishan | ENSSSCP00040038712 | 18.6792 | 10.566 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040032621 | 15.97 | 8.14577 | sus_scrofa_meishan | ENSSSCP00040038712 | 28.1132 | 14.3396 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040006717 | 29.7753 | 15.7303 | sus_scrofa_meishan | ENSSSCP00040038712 | 20 | 10.566 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040028282 | 29.5385 | 15.6923 | sus_scrofa_meishan | ENSSSCP00040038712 | 18.1132 | 9.62264 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040042391 | 35.1916 | 18.1185 | sus_scrofa_meishan | ENSSSCP00040038712 | 19.0566 | 9.81132 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040009622 | 33.3333 | 16.3265 | sus_scrofa_meishan | ENSSSCP00040038712 | 18.4906 | 9.0566 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040006583 | 26.9048 | 14.2857 | sus_scrofa_meishan | ENSSSCP00040038712 | 21.3208 | 11.3208 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040047074 | 30.7947 | 16.2252 | sus_scrofa_meishan | ENSSSCP00040038712 | 17.5472 | 9.24528 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040021364 | 31.4286 | 16 | sus_scrofa_meishan | ENSSSCP00040038712 | 10.3774 | 5.28302 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040037998 | 36.9295 | 19.0871 | sus_scrofa_meishan | ENSSSCP00040038712 | 16.7925 | 8.67924 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040002965 | 38.1443 | 18.5567 | sus_scrofa_meishan | ENSSSCP00040038712 | 6.98113 | 3.39623 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040001417 | 28.5714 | 17.8571 | sus_scrofa_meishan | ENSSSCP00040038712 | 4.5283 | 2.83019 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040000266 | 31.3609 | 16.8639 | sus_scrofa_meishan | ENSSSCP00040038712 | 20 | 10.7547 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040003998 | 29.5393 | 14.9051 | sus_scrofa_meishan | ENSSSCP00040038712 | 20.566 | 10.3774 |
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040038712 | 100 | 100 | sus_scrofa_usmarc | ENSSSCP00070013119 | 100 | 100 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040038712 | 79.6226 | 76.4151 | sus_scrofa_tibetan | ENSSSCP00015031251 | 89.7872 | 86.1702 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040038712 | 100 | 100 | sus_scrofa | ENSSSCP00000053421 | 100 | 100 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040038712 | 100 | 100 | sus_scrofa_wuzhishan | ENSSSCP00005044581 | 100 | 100 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040038712 | 100 | 100 | sus_scrofa_berkshire | ENSSSCP00065034279 | 100 | 100 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040038712 | 100 | 100 | ovis_aries_rambouillet | ENSOARP00020007030 | 100 | 100 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040038712 | 96.9811 | 96.7924 | sus_scrofa_jinhua | ENSSSCP00060040334 | 97.9048 | 97.7143 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040038712 | 96.9811 | 96.7924 | sus_scrofa_rongchang | ENSSSCP00030023641 | 97.9048 | 97.7143 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040038712 | 100 | 100 | sus_scrofa_pietrain | ENSSSCP00055023356 | 100 | 100 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040038712 | 100 | 100 | equus_caballus | ENSECAP00000011573 | 97.4265 | 97.4265 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040038712 | 96.9811 | 96.7924 | sus_scrofa_largewhite | ENSSSCP00025020468 | 97.9048 | 97.7143 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040038712 | 98.6792 | 98.6792 | bos_taurus | ENSBTAP00000060007 | 98.6792 | 98.6792 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040038712 | 100 | 100 | sus_scrofa_hampshire | ENSSSCP00035040259 | 100 | 100 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040038712 | 96.9811 | 96.7924 | sus_scrofa_bamei | ENSSSCP00050038952 | 97.9048 | 97.7143 |
| ENSSSCG00040064061 | sus_scrofa_meishan | ENSSSCP00040038712 | 96.9811 | 96.7924 | sus_scrofa_landrace | ENSSSCP00045014235 | 97.9048 | 97.7143 |
| Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |
