RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	ENSSSCG00040060711	Gene ID	100514739	Accession	-
Symbol	NXT1	Alias	-	Full Name	nuclear transport factor 2 like export factor 1
Status	Confidence	Length	3230 bases	Strand	Minus strand
Position	LUXQ01119387.1 : 319885 - 323114	RNA binding domain	NTF2
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040035957	NTF2	PF02136	6e-30	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
NXT1-201	ENSSSCT00040082573	956	140aa	ENSSSCP00040035957

Gene Model

Click here to download ENSSSCG00040060711's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040060711's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040060711	sus_scrofa_meishan	ENSSSCP00040033961	61.6162	53.5354	sus_scrofa_meishan	ENSSSCP00040035957	87.1429	75.7143
ENSSSCG00040060711	sus_scrofa_meishan	ENSSSCP00040001746	41.7476	25.2427	sus_scrofa_meishan	ENSSSCP00040035957	30.7143	18.5714

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040060711	sus_scrofa_meishan	ENSSSCP00040035957	100	100	sus_scrofa_usmarc	ENSSSCP00070036242	100	100
ENSSSCG00040060711	sus_scrofa_meishan	ENSSSCP00040035957	100	100	sus_scrofa_tibetan	ENSSSCP00015013270	100	100
ENSSSCG00040060711	sus_scrofa_meishan	ENSSSCP00040035957	100	100	sus_scrofa	ENSSSCP00000007582	100	100
ENSSSCG00040060711	sus_scrofa_meishan	ENSSSCP00040035957	100	99.2857	sus_scrofa_wuzhishan	ENSSSCP00005019281	60.8696	60.4348
ENSSSCG00040060711	sus_scrofa_meishan	ENSSSCP00040035957	100	100	sus_scrofa_berkshire	ENSSSCP00065028151	100	100
ENSSSCG00040060711	sus_scrofa_meishan	ENSSSCP00040035957	98.5714	97.8571	ovis_aries_rambouillet	ENSOARP00020005992	98.5714	97.8571
ENSSSCG00040060711	sus_scrofa_meishan	ENSSSCP00040035957	100	100	sus_scrofa_jinhua	ENSSSCP00060034441	100	100
ENSSSCG00040060711	sus_scrofa_meishan	ENSSSCP00040035957	100	100	sus_scrofa_rongchang	ENSSSCP00030028966	100	100
ENSSSCG00040060711	sus_scrofa_meishan	ENSSSCP00040035957	100	100	sus_scrofa_pietrain	ENSSSCP00055020222	100	100
ENSSSCG00040060711	sus_scrofa_meishan	ENSSSCP00040035957	97.8571	94.2857	equus_caballus	ENSECAP00000034341	71.7277	69.1099
ENSSSCG00040060711	sus_scrofa_meishan	ENSSSCP00040035957	100	100	sus_scrofa_largewhite	ENSSSCP00025035947	100	100
ENSSSCG00040060711	sus_scrofa_meishan	ENSSSCP00040035957	98.5714	97.8571	bos_taurus	ENSBTAP00000006568	98.5714	97.8571
ENSSSCG00040060711	sus_scrofa_meishan	ENSSSCP00040035957	100	100	sus_scrofa_hampshire	ENSSSCP00035027810	100	100
ENSSSCG00040060711	sus_scrofa_meishan	ENSSSCP00040035957	100	100	sus_scrofa_bamei	ENSSSCP00050017610	100	100
ENSSSCG00040060711	sus_scrofa_meishan	ENSSSCP00040035957	100	100	sus_scrofa_landrace	ENSSSCP00045025190	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression