RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00040057799	Gene ID		Accession	-
Symbol	NXT2	Alias	-	Full Name	NA
Status	Confidence	Length	7018 bases	Strand	Minus strand
Position	LUXQ01099846.1 : 554914 - 561931	RNA binding domain	NTF2
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040033808	NTF2	PF02136	8.8e-30	1
ENSSSCP00040033859	NTF2	PF02136	1.2e-29	1
ENSSSCP00040033961	NTF2	PF02136	2.2e-29	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
NXT2-201	ENSSSCT00040078409	2805	142aa	ENSSSCP00040033808
NXT2-202	ENSSSCT00040078491	3232	156aa	ENSSSCP00040033859
NXT2-203	ENSSSCT00040078704	597	198aa	ENSSSCP00040033961

Gene Model

Click here to download ENSSSCG00040057799's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040057799's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040057799	sus_scrofa_meishan	ENSSSCP00040001746	41.7476	26.2136	sus_scrofa_meishan	ENSSSCP00040033961	21.7172	13.6364
ENSSSCG00040057799	sus_scrofa_meishan	ENSSSCP00040035957	87.1429	75.7143	sus_scrofa_meishan	ENSSSCP00040033961	61.6162	53.5354

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040057799	sus_scrofa_meishan	ENSSSCP00040033961	100	100	sus_scrofa_usmarc	ENSSSCP00070049352	100	100
ENSSSCG00040057799	sus_scrofa_meishan	ENSSSCP00040033961	100	100	sus_scrofa_tibetan	ENSSSCP00015021704	100	100
ENSSSCG00040057799	sus_scrofa_meishan	ENSSSCP00040033961	100	100	sus_scrofa	ENSSSCP00000045398	100	100
ENSSSCG00040057799	sus_scrofa_meishan	ENSSSCP00040033961	97.9798	97.9798	sus_scrofa_wuzhishan	ENSSSCP00005025805	95.5665	95.5665
ENSSSCG00040057799	sus_scrofa_meishan	ENSSSCP00040033961	100	100	sus_scrofa_berkshire	ENSSSCP00065023955	100	100
ENSSSCG00040057799	sus_scrofa_meishan	ENSSSCP00040033961	70.202	67.6768	ovis_aries_rambouillet	ENSOARP00020011431	97.8873	94.3662
ENSSSCG00040057799	sus_scrofa_meishan	ENSSSCP00040033961	91.9192	83.8384	ovis_aries_rambouillet	ENSOARP00020021318	92.3858	84.264
ENSSSCG00040057799	sus_scrofa_meishan	ENSSSCP00040033961	68.6869	66.1616	ovis_aries_rambouillet	ENSOARP00020022334	97.1429	93.5714
ENSSSCG00040057799	sus_scrofa_meishan	ENSSSCP00040033961	100	100	sus_scrofa_jinhua	ENSSSCP00060007800	100	100
ENSSSCG00040057799	sus_scrofa_meishan	ENSSSCP00040033961	100	100	sus_scrofa_rongchang	ENSSSCP00030038499	100	100
ENSSSCG00040057799	sus_scrofa_meishan	ENSSSCP00040033961	100	100	sus_scrofa_pietrain	ENSSSCP00055032480	100	100
ENSSSCG00040057799	sus_scrofa_meishan	ENSSSCP00040033961	89.3939	87.3737	equus_caballus	ENSECAP00000012701	90.3061	88.2653
ENSSSCG00040057799	sus_scrofa_meishan	ENSSSCP00040033961	100	100	sus_scrofa_largewhite	ENSSSCP00025001358	100	100
ENSSSCG00040057799	sus_scrofa_meishan	ENSSSCP00040033961	70.202	67.1717	bos_taurus	ENSBTAP00000027635	97.8873	93.662
ENSSSCG00040057799	sus_scrofa_meishan	ENSSSCP00040033961	100	100	sus_scrofa_hampshire	ENSSSCP00035036131	100	100
ENSSSCG00040057799	sus_scrofa_meishan	ENSSSCP00040033961	100	100	sus_scrofa_bamei	ENSSSCP00050007519	100	100
ENSSSCG00040057799	sus_scrofa_meishan	ENSSSCP00040033961	100	100	sus_scrofa_landrace	ENSSSCP00045000050	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression