RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	ENSSSCG00040052151	Gene ID		Accession	-
Symbol	SND1	Alias	-	Full Name	NA
Status	Confidence	Length	391978 bases	Strand	Plus strand
Position	LUXQ01093155.1 : 2829886 - 3221863	RNA binding domain	SNase , TUDOR
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040030113	SNase	PF00565	1.2e-68	1
ENSSSCP00040030113	SNase	PF00565	1.2e-68	2
ENSSSCP00040030113	SNase	PF00565	1.2e-68	3
ENSSSCP00040030113	SNase	PF00565	1.2e-68	4
ENSSSCP00040030113	SNase	PF00565	1.2e-68	5
ENSSSCP00040030113	TUDOR	PF00567	7.5e-28	6
ENSSSCP00040030218	SNase	PF00565	1.3e-68	1
ENSSSCP00040030218	SNase	PF00565	1.3e-68	2
ENSSSCP00040030218	SNase	PF00565	1.3e-68	3
ENSSSCP00040030218	SNase	PF00565	1.3e-68	4
ENSSSCP00040030218	SNase	PF00565	1.3e-68	5
ENSSSCP00040030218	TUDOR	PF00567	7.5e-28	6
ENSSSCP00040030005	SNase	PF00565	1.3e-68	1
ENSSSCP00040030005	SNase	PF00565	1.3e-68	2
ENSSSCP00040030005	SNase	PF00565	1.3e-68	3
ENSSSCP00040030005	SNase	PF00565	1.3e-68	4
ENSSSCP00040030005	SNase	PF00565	1.3e-68	5
ENSSSCP00040030005	TUDOR	PF00567	7.6e-28	6

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
SND1-201	ENSSSCT00040070457	3441	910aa	ENSSSCP00040030005
SND1-202	ENSSSCT00040070690	3445	897aa	ENSSSCP00040030113
SND1-203	ENSSSCT00040070926	3195	902aa	ENSSSCP00040030218

Gene Model

Click here to download ENSSSCG00040052151's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040052151's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040052151	sus_scrofa_meishan	ENSSSCP00040036674	26.3566	12.7907	sus_scrofa_meishan	ENSSSCP00040030005	7.47253	3.62637
ENSSSCG00040052151	sus_scrofa_meishan	ENSSSCP00040005026	35.0453	15.4079	sus_scrofa_meishan	ENSSSCP00040030005	25.4945	11.2088

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040052151	sus_scrofa_meishan	ENSSSCP00040030005	100	100	sus_scrofa_usmarc	ENSSSCP00070048085	100	100
ENSSSCG00040052151	sus_scrofa_meishan	ENSSSCP00040030005	100	100	sus_scrofa_tibetan	ENSSSCP00015023632	100	100
ENSSSCG00040052151	sus_scrofa_meishan	ENSSSCP00040030005	100	100	sus_scrofa	ENSSSCP00000065887	100	100
ENSSSCG00040052151	sus_scrofa_meishan	ENSSSCP00040030005	100	100	sus_scrofa_wuzhishan	ENSSSCP00005040336	100	100
ENSSSCG00040052151	sus_scrofa_meishan	ENSSSCP00040030005	100	100	sus_scrofa_berkshire	ENSSSCP00065039042	100	100
ENSSSCG00040052151	sus_scrofa_meishan	ENSSSCP00040030005	97.6923	96.7033	ovis_aries_rambouillet	ENSOARP00020010690	99.5521	98.5442
ENSSSCG00040052151	sus_scrofa_meishan	ENSSSCP00040030005	99.7802	98.9011	ovis_aries_rambouillet	ENSOARP00020006311	99.7802	98.9011
ENSSSCG00040052151	sus_scrofa_meishan	ENSSSCP00040030005	100	100	sus_scrofa_jinhua	ENSSSCP00060000790	100	100
ENSSSCG00040052151	sus_scrofa_meishan	ENSSSCP00040030005	100	100	sus_scrofa_rongchang	ENSSSCP00030041737	100	100
ENSSSCG00040052151	sus_scrofa_meishan	ENSSSCP00040030005	100	100	sus_scrofa_pietrain	ENSSSCP00055042455	100	100
ENSSSCG00040052151	sus_scrofa_meishan	ENSSSCP00040030005	99.6703	98.7912	equus_caballus	ENSECAP00000010447	95.7761	94.9314
ENSSSCG00040052151	sus_scrofa_meishan	ENSSSCP00040030005	50.2198	48.3517	sus_scrofa_largewhite	ENSSSCP00025006253	88.2239	84.9421
ENSSSCG00040052151	sus_scrofa_meishan	ENSSSCP00040030005	99.5604	98.6813	bos_taurus	ENSBTAP00000014154	99.5604	98.6813
ENSSSCG00040052151	sus_scrofa_meishan	ENSSSCP00040030005	100	100	sus_scrofa_hampshire	ENSSSCP00035047823	100	100
ENSSSCG00040052151	sus_scrofa_meishan	ENSSSCP00040030005	100	100	sus_scrofa_bamei	ENSSSCP00050031454	100	100
ENSSSCG00040052151	sus_scrofa_meishan	ENSSSCP00040030005	100	100	sus_scrofa_landrace	ENSSSCP00045008628	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression