RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00040052097	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	2981 bases	Strand	Plus strand
Position	LUXQ01088435.1 : 1406966 - 1409946	RNA binding domain	Ribosomal_S5_C , Ribosomal_S5
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040029977	Ribosomal_S5_C	PF03719	2.9e-15	1
ENSSSCP00040029977	Ribosomal_S5	PF00333	2.5e-23	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00040070389	756	251aa	ENSSSCP00040029977

Gene Model

Click here to download ENSSSCG00040052097's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040052097's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040052097	sus_scrofa_meishan	ENSSSCP00040035304	63.8225	59.0444	sus_scrofa_meishan	ENSSSCP00040029977	74.502	68.9243
ENSSSCG00040052097	sus_scrofa_meishan	ENSSSCP00040000022	21.968	10.984	sus_scrofa_meishan	ENSSSCP00040029977	38.247	19.1235

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040052097	sus_scrofa_meishan	ENSSSCP00040029977	59.3625	51.7928	sus_scrofa_usmarc	ENSSSCP00070011563	54.7794	47.7941
ENSSSCG00040052097	sus_scrofa_meishan	ENSSSCP00040029977	99.2032	98.4064	sus_scrofa	ENSSSCP00000037150	99.2032	98.4064
ENSSSCG00040052097	sus_scrofa_meishan	ENSSSCP00040029977	66.9323	62.9482	ovis_aries_rambouillet	ENSOARP00020029219	72.103	67.8112
ENSSSCG00040052097	sus_scrofa_meishan	ENSSSCP00040029977	56.1753	50.5976	ovis_aries_rambouillet	ENSOARP00020030072	64.6789	58.2569
ENSSSCG00040052097	sus_scrofa_meishan	ENSSSCP00040029977	55.7769	51.3944	ovis_aries_rambouillet	ENSOARP00020034403	66.9856	61.7225
ENSSSCG00040052097	sus_scrofa_meishan	ENSSSCP00040029977	99.2032	98.8048	sus_scrofa_rongchang	ENSSSCP00030042838	99.2032	98.8048
ENSSSCG00040052097	sus_scrofa_meishan	ENSSSCP00040029977	99.2032	98.4064	sus_scrofa_pietrain	ENSSSCP00055041222	99.2032	98.4064
ENSSSCG00040052097	sus_scrofa_meishan	ENSSSCP00040029977	56.1753	52.5896	equus_caballus	ENSECAP00000026225	70.8543	66.3317
ENSSSCG00040052097	sus_scrofa_meishan	ENSSSCP00040029977	74.502	68.1275	equus_caballus	ENSECAP00000054536	63.8225	58.3618
ENSSSCG00040052097	sus_scrofa_meishan	ENSSSCP00040029977	99.2032	98.4064	sus_scrofa_largewhite	ENSSSCP00025023806	99.2032	98.4064
ENSSSCG00040052097	sus_scrofa_meishan	ENSSSCP00040029977	29.0837	24.3028	bos_taurus	ENSBTAP00000068576	55.7252	46.5649
ENSSSCG00040052097	sus_scrofa_meishan	ENSSSCP00040029977	41.8327	36.6534	bos_taurus	ENSBTAP00000066067	50.7246	44.4444
ENSSSCG00040052097	sus_scrofa_meishan	ENSSSCP00040029977	74.9004	68.9243	bos_taurus	ENSBTAP00000012544	60.8414	55.9871
ENSSSCG00040052097	sus_scrofa_meishan	ENSSSCP00040029977	98.8048	98.008	sus_scrofa_bamei	ENSSSCP00050012983	98.8048	98.008

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression