RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	ENSSSCG00040050870	Gene ID		Accession	-
Symbol	TDRD7	Alias	-	Full Name	NA
Status	Confidence	Length	129765 bases	Strand	Plus strand
Position	LUXQ01111515.1 : 2593510 - 2723274	RNA binding domain	OST-HTH , TUDOR
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040029422	OST-HTH	PF12872	6.1e-21	1
ENSSSCP00040029422	OST-HTH	PF12872	6.1e-21	2
ENSSSCP00040029422	TUDOR	PF00567	2.7e-83	3
ENSSSCP00040029422	TUDOR	PF00567	2.7e-83	4
ENSSSCP00040029422	TUDOR	PF00567	2.7e-83	5
ENSSSCP00040029500	OST-HTH	PF12872	6.5e-21	1
ENSSSCP00040029500	OST-HTH	PF12872	6.5e-21	2
ENSSSCP00040029500	TUDOR	PF00567	1.3e-65	3
ENSSSCP00040029500	TUDOR	PF00567	1.3e-65	4
ENSSSCP00040029500	TUDOR	PF00567	1.3e-65	5
ENSSSCP00040029257	OST-HTH	PF12872	7.8e-21	1
ENSSSCP00040029257	OST-HTH	PF12872	7.8e-21	2
ENSSSCP00040029257	TUDOR	PF00567	3.1e-83	3
ENSSSCP00040029257	TUDOR	PF00567	3.1e-83	4
ENSSSCP00040029257	TUDOR	PF00567	3.1e-83	5

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
TDRD7-201	ENSSSCT00040068740	6173	1098aa	ENSSSCP00040029257
TDRD7-202	ENSSSCT00040069119	3947	1032aa	ENSSSCP00040029422
TDRD7-203	ENSSSCT00040069286	3567	1053aa	ENSSSCP00040029500

Gene Model

Click here to download ENSSSCG00040050870's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040050870's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040050870	sus_scrofa_meishan	ENSSSCP00040027253	22.6615	10.0289	sus_scrofa_meishan	ENSSSCP00040029257	21.4025	9.47177
ENSSSCG00040050870	sus_scrofa_meishan	ENSSSCP00040040996	26.5957	11.4362	sus_scrofa_meishan	ENSSSCP00040029257	9.10747	3.91621
ENSSSCG00040050870	sus_scrofa_meishan	ENSSSCP00040043749	30.8874	14.4198	sus_scrofa_meishan	ENSSSCP00040029257	32.969	15.3916
ENSSSCG00040050870	sus_scrofa_meishan	ENSSSCP00040045738	15.0573	6.05565	sus_scrofa_meishan	ENSSSCP00040029257	8.37887	3.36976
ENSSSCG00040050870	sus_scrofa_meishan	ENSSSCP00040001607	15.6116	7.52023	sus_scrofa_meishan	ENSSSCP00040029257	29.8725	14.3898

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040050870	sus_scrofa_meishan	ENSSSCP00040029257	99.9089	99.9089	sus_scrofa_usmarc	ENSSSCP00070030092	99.9089	99.9089
ENSSSCG00040050870	sus_scrofa_meishan	ENSSSCP00040029257	100	100	sus_scrofa_tibetan	ENSSSCP00015017851	100	100
ENSSSCG00040050870	sus_scrofa_meishan	ENSSSCP00040029257	100	100	sus_scrofa	ENSSSCP00000076981	100	100
ENSSSCG00040050870	sus_scrofa_meishan	ENSSSCP00040029257	99.9089	99.9089	sus_scrofa_wuzhishan	ENSSSCP00005016754	99.9089	99.9089
ENSSSCG00040050870	sus_scrofa_meishan	ENSSSCP00040029257	99.9089	99.9089	sus_scrofa_berkshire	ENSSSCP00065040624	99.9089	99.9089
ENSSSCG00040050870	sus_scrofa_meishan	ENSSSCP00040029257	96.1749	93.6248	ovis_aries_rambouillet	ENSOARP00020002225	96.1749	93.6248
ENSSSCG00040050870	sus_scrofa_meishan	ENSSSCP00040029257	100	100	sus_scrofa_jinhua	ENSSSCP00060022845	100	100
ENSSSCG00040050870	sus_scrofa_meishan	ENSSSCP00040029257	100	100	sus_scrofa_rongchang	ENSSSCP00030023133	96.9109	96.9109
ENSSSCG00040050870	sus_scrofa_meishan	ENSSSCP00040029257	99.9089	99.9089	sus_scrofa_pietrain	ENSSSCP00055037876	99.9089	99.9089
ENSSSCG00040050870	sus_scrofa_meishan	ENSSSCP00040029257	96.4481	93.3515	equus_caballus	ENSECAP00000015533	94.8075	91.7636
ENSSSCG00040050870	sus_scrofa_meishan	ENSSSCP00040029257	100	100	sus_scrofa_largewhite	ENSSSCP00025040646	100	100
ENSSSCG00040050870	sus_scrofa_meishan	ENSSSCP00040029257	96.1749	92.9873	bos_taurus	ENSBTAP00000004845	96.1749	92.9873
ENSSSCG00040050870	sus_scrofa_meishan	ENSSSCP00040029257	100	100	sus_scrofa_hampshire	ENSSSCP00035032091	100	100
ENSSSCG00040050870	sus_scrofa_meishan	ENSSSCP00040029257	100	100	sus_scrofa_bamei	ENSSSCP00050019639	100	100
ENSSSCG00040050870	sus_scrofa_meishan	ENSSSCP00040029257	100	100	sus_scrofa_landrace	ENSSSCP00045033821	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression