RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00040048846	Gene ID		Accession	-
Symbol	TSEN2	Alias	-	Full Name	NA
Status	Confidence	Length	62392 bases	Strand	Plus strand
Position	LUXQ01098390.1 : 1816720 - 1879111	RNA binding domain	tRNA_int_endo , tRNA_int_endo_N
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040027961	tRNA_int_endo	PF01974	1.2e-19	1
ENSSSCP00040027961	tRNA_int_endo_N	PF02778	1.6e-18	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
TSEN2-201	ENSSSCT00040065827	5666	103aa	ENSSSCP00040027903
TSEN2-202	ENSSSCT00040065945	6587	463aa	ENSSSCP00040027961

Gene Model

Click here to download ENSSSCG00040048846's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040048846's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040048846

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040048846	sus_scrofa_meishan	ENSSSCP00040027961	100	100	sus_scrofa_usmarc	ENSSSCP00070027800	100	100
ENSSSCG00040048846	sus_scrofa_meishan	ENSSSCP00040027961	21.8143	20.7343	sus_scrofa_tibetan	ENSSSCP00015008445	93.5185	88.8889
ENSSSCG00040048846	sus_scrofa_meishan	ENSSSCP00040027961	99.568	99.568	sus_scrofa	ENSSSCP00000022293	99.568	99.568
ENSSSCG00040048846	sus_scrofa_meishan	ENSSSCP00040027961	100	99.784	sus_scrofa_wuzhishan	ENSSSCP00005027077	100	99.784
ENSSSCG00040048846	sus_scrofa_meishan	ENSSSCP00040027961	100	99.784	sus_scrofa_berkshire	ENSSSCP00065020048	100	99.784
ENSSSCG00040048846	sus_scrofa_meishan	ENSSSCP00040027961	84.2333	75.378	ovis_aries_rambouillet	ENSOARP00020033638	85.5263	76.5351
ENSSSCG00040048846	sus_scrofa_meishan	ENSSSCP00040027961	99.568	99.568	sus_scrofa_jinhua	ENSSSCP00060011781	99.568	99.568
ENSSSCG00040048846	sus_scrofa_meishan	ENSSSCP00040027961	100	100	sus_scrofa_rongchang	ENSSSCP00030026094	100	100
ENSSSCG00040048846	sus_scrofa_meishan	ENSSSCP00040027961	100	100	sus_scrofa_pietrain	ENSSSCP00055015719	100	100
ENSSSCG00040048846	sus_scrofa_meishan	ENSSSCP00040027961	85.7451	77.3218	equus_caballus	ENSECAP00000010614	85.1931	76.824
ENSSSCG00040048846	sus_scrofa_meishan	ENSSSCP00040027961	100	99.784	sus_scrofa_largewhite	ENSSSCP00025018891	100	99.784
ENSSSCG00040048846	sus_scrofa_meishan	ENSSSCP00040027961	85.0972	76.6739	bos_taurus	ENSBTAP00000057996	74.6212	67.2348
ENSSSCG00040048846	sus_scrofa_meishan	ENSSSCP00040027961	100	100	sus_scrofa_hampshire	ENSSSCP00035045851	100	100
ENSSSCG00040048846	sus_scrofa_meishan	ENSSSCP00040027961	100	100	sus_scrofa_bamei	ENSSSCP00050001623	100	100
ENSSSCG00040048846	sus_scrofa_meishan	ENSSSCP00040027961	94.3845	94.3845	sus_scrofa_landrace	ENSSSCP00045000344	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression