RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00040048064	Gene ID		Accession	-
Symbol	STN1	Alias	-	Full Name	Sus scrofa STN1 subunit of CST complex (STN1), mRNA.
Status	Confidence	Length	41198 bases	Strand	Plus strand
Position	LUXQ01065584.1 : 415425 - 456622	RNA binding domain	tRNA_anti-codon
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040027354	tRNA_anti-codon	PF01336	1.4e-07	1
ENSSSCP00040027400	tRNA_anti-codon	PF01336	1.4e-07	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
STN1-201	ENSSSCT00040064744	2788	370aa	ENSSSCP00040027354
STN1-202	ENSSSCT00040064832	1865	371aa	ENSSSCP00040027400

Gene Model

Click here to download ENSSSCG00040048064's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040048064's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040048064	sus_scrofa_meishan	ENSSSCP00040039386	37.7778	17.4074	sus_scrofa_meishan	ENSSSCP00040027400	27.4933	12.6685

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040048064	sus_scrofa_meishan	ENSSSCP00040027400	99.1914	99.1914	sus_scrofa_usmarc	ENSSSCP00070017321	99.1914	99.1914
ENSSSCG00040048064	sus_scrofa_meishan	ENSSSCP00040027400	99.1914	99.1914	sus_scrofa_tibetan	ENSSSCP00015037831	99.1914	99.1914
ENSSSCG00040048064	sus_scrofa_meishan	ENSSSCP00040027400	99.1914	99.1914	sus_scrofa	ENSSSCP00000040692	99.4595	99.4595
ENSSSCG00040048064	sus_scrofa_meishan	ENSSSCP00040027400	93.531	93.531	sus_scrofa_wuzhishan	ENSSSCP00005005095	75.1082	75.1082
ENSSSCG00040048064	sus_scrofa_meishan	ENSSSCP00040027400	90.566	88.6792	sus_scrofa_berkshire	ENSSSCP00065006280	68.2927	66.8699
ENSSSCG00040048064	sus_scrofa_meishan	ENSSSCP00040027400	92.9919	84.9057	ovis_aries_rambouillet	ENSOARP00020011310	93.75	85.5978
ENSSSCG00040048064	sus_scrofa_meishan	ENSSSCP00040027400	99.4609	99.4609	sus_scrofa_jinhua	ENSSSCP00060025130	99.4609	99.4609
ENSSSCG00040048064	sus_scrofa_meishan	ENSSSCP00040027400	100	100	sus_scrofa_rongchang	ENSSSCP00030006546	100	100
ENSSSCG00040048064	sus_scrofa_meishan	ENSSSCP00040027400	90.2965	88.4097	sus_scrofa_pietrain	ENSSSCP00055018716	88.8594	87.0027
ENSSSCG00040048064	sus_scrofa_meishan	ENSSSCP00040027400	83.2884	77.8976	equus_caballus	ENSECAP00000021026	80.2597	75.0649
ENSSSCG00040048064	sus_scrofa_meishan	ENSSSCP00040027400	99.1914	99.1914	sus_scrofa_largewhite	ENSSSCP00025043691	99.1914	99.1914
ENSSSCG00040048064	sus_scrofa_meishan	ENSSSCP00040027400	93.2615	85.4447	bos_taurus	ENSBTAP00000057271	88.4911	81.0742
ENSSSCG00040048064	sus_scrofa_meishan	ENSSSCP00040027400	92.7224	92.7224	sus_scrofa_hampshire	ENSSSCP00035008534	83.0918	83.0918
ENSSSCG00040048064	sus_scrofa_meishan	ENSSSCP00040027400	90.2965	88.4097	sus_scrofa_bamei	ENSSSCP00050031892	68.0894	66.6667
ENSSSCG00040048064	sus_scrofa_meishan	ENSSSCP00040027400	89.2183	87.8706	sus_scrofa_landrace	ENSSSCP00045018408	70.5757	69.5096

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression