Description

Ensembl ID ENSSSCG00040046686 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 88369 bases Strand Plus strand
Position LUXQ01082146.1 : 1447661 - 1536029 RNA binding domain OST-HTH , TUDOR
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSSSCP00040027332 OST-HTH PF12872 6.1e-31 1
ENSSSCP00040027332 OST-HTH PF12872 6.1e-31 2
ENSSSCP00040027332 OST-HTH PF12872 6.1e-31 3
ENSSSCP00040027332 TUDOR PF00567 1.5e-20 4
ENSSSCP00040027253 OST-HTH PF12872 7.5e-31 1
ENSSSCP00040027253 OST-HTH PF12872 7.5e-31 2
ENSSSCP00040027253 OST-HTH PF12872 7.5e-31 3
ENSSSCP00040027253 TUDOR PF00567 1.5e-20 4

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSSSCT00040064575 3114 1037aa ENSSSCP00040027253
- ENSSSCT00040064706 2949 982aa ENSSSCP00040027332

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00040046686sus_scrofa_meishanENSSSCP0004004099618.08516.64894sus_scrofa_meishanENSSSCP000400272536.557382.4108
ENSSSCG00040046686sus_scrofa_meishanENSSSCP0004004374919.79529.30034sus_scrofa_meishanENSSSCP0004002725322.372210.5111
ENSSSCG00040046686sus_scrofa_meishanENSSSCP0004004573828.805213.748sus_scrofa_meishanENSSSCP0004002725316.9728.10029
ENSSSCG00040046686sus_scrofa_meishanENSSSCP0004000160711.61355.47358sus_scrofa_meishanENSSSCP0004002725323.529411.0897
ENSSSCG00040046686sus_scrofa_meishanENSSSCP0004002925721.40259.47177sus_scrofa_meishanENSSSCP0004002725322.661510.0289

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00040046686sus_scrofa_meishanENSSSCP0004002725399.903699.9036sus_scrofa_usmarcENSSSCP0007002384699.903699.9036
ENSSSCG00040046686sus_scrofa_meishanENSSSCP0004002725373.095572.5169sus_scrofa_tibetanENSSSCP0001501254597.680496.9072
ENSSSCG00040046686sus_scrofa_meishanENSSSCP0004002725399.807199.7107sus_scrofaENSSSCP0000001646299.903599.807
ENSSSCG00040046686sus_scrofa_meishanENSSSCP0004002725399.710799.7107sus_scrofa_wuzhishanENSSSCP0000502584899.903499.9034
ENSSSCG00040046686sus_scrofa_meishanENSSSCP0004002725399.903699.9036sus_scrofa_berkshireENSSSCP0006500119498.760798.7607
ENSSSCG00040046686sus_scrofa_meishanENSSSCP0004002725392.960587.5603ovis_aries_rambouilletENSOARP0002002913993.865688.4128
ENSSSCG00040046686sus_scrofa_meishanENSSSCP00040027253100100sus_scrofa_jinhuaENSSSCP0006001283898.856198.8561
ENSSSCG00040046686sus_scrofa_meishanENSSSCP00040027253100100sus_scrofa_rongchangENSSSCP0003003319698.856198.8561
ENSSSCG00040046686sus_scrofa_meishanENSSSCP0004002725399.903699.9036sus_scrofa_pietrainENSSSCP0005504030799.903699.9036
ENSSSCG00040046686sus_scrofa_meishanENSSSCP0004002725391.51486.0174equus_caballusENSECAP0000007640787.465482.212
ENSSSCG00040046686sus_scrofa_meishanENSSSCP0004002725399.903699.9036sus_scrofa_largewhiteENSSSCP0002502329499.903699.9036
ENSSSCG00040046686sus_scrofa_meishanENSSSCP0004002725391.51486.6924bos_taurusENSBTAP0000000311891.51486.6924
ENSSSCG00040046686sus_scrofa_meishanENSSSCP0004002725399.903699.9036sus_scrofa_hampshireENSSSCP0003501160598.760798.7607
ENSSSCG00040046686sus_scrofa_meishanENSSSCP0004002725399.903699.9036sus_scrofa_bameiENSSSCP0005003848898.760798.7607
ENSSSCG00040046686sus_scrofa_meishanENSSSCP0004002725399.807199.8071sus_scrofa_landraceENSSSCP0004504380499.807199.8071

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression