RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00040045253	Gene ID		Accession	-
Symbol	RNF139	Alias	-	Full Name	NA
Status	Confidence	Length	42704 bases	Strand	Plus strand
Position	LUXQ01096507.1 : 1536 - 44239	RNA binding domain	Met_10
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040025497	Met_10	PF02475	3.9e-29	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
RNF139-201	ENSSSCT00040060713	4503	439aa	ENSSSCP00040025497
RNF139-202	ENSSSCT00040060742	6321	651aa	ENSSSCP00040025514
RNF139-203	ENSSSCT00040060785	8028	665aa	ENSSSCP00040025532

Gene Model

Click here to download ENSSSCG00040045253's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040045253's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040045253	sus_scrofa_meishan	ENSSSCP00040017435	16.1616	6.9697	sus_scrofa_meishan	ENSSSCP00040025532	24.0602	10.3759
ENSSSCG00040045253	sus_scrofa_meishan	ENSSSCP00040018425	19.6347	10.5023	sus_scrofa_meishan	ENSSSCP00040025532	6.46617	3.45865
ENSSSCG00040045253	sus_scrofa_meishan	ENSSSCP00040003385	41.8535	23.4679	sus_scrofa_meishan	ENSSSCP00040025532	42.1053	23.609
ENSSSCG00040045253	sus_scrofa_meishan	ENSSSCP00040033716	19.0923	11.1111	sus_scrofa_meishan	ENSSSCP00040025532	18.3459	10.6767
ENSSSCG00040045253	sus_scrofa_meishan	ENSSSCP00040000903	21.0458	11.1111	sus_scrofa_meishan	ENSSSCP00040025532	24.2105	12.782

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040045253	sus_scrofa_meishan	ENSSSCP00040025532	100	100	sus_scrofa_usmarc	ENSSSCP00070008362	100	100
ENSSSCG00040045253	sus_scrofa_meishan	ENSSSCP00040025532	93.985	93.985	sus_scrofa_tibetan	ENSSSCP00015001231	100	100
ENSSSCG00040045253	sus_scrofa_meishan	ENSSSCP00040025532	99.8496	99.8496	sus_scrofa	ENSSSCP00000027691	99.8496	99.8496
ENSSSCG00040045253	sus_scrofa_meishan	ENSSSCP00040025532	97.2932	97.2932	sus_scrofa_wuzhishan	ENSSSCP00005020079	97.2932	97.2932
ENSSSCG00040045253	sus_scrofa_meishan	ENSSSCP00040025532	100	100	sus_scrofa_berkshire	ENSSSCP00065034669	100	100
ENSSSCG00040045253	sus_scrofa_meishan	ENSSSCP00040025532	98.4962	97.1429	ovis_aries_rambouillet	ENSOARP00020015748	98.4962	97.1429
ENSSSCG00040045253	sus_scrofa_meishan	ENSSSCP00040025532	100	100	sus_scrofa_jinhua	ENSSSCP00060018133	100	100
ENSSSCG00040045253	sus_scrofa_meishan	ENSSSCP00040025532	100	100	sus_scrofa_rongchang	ENSSSCP00030016061	100	100
ENSSSCG00040045253	sus_scrofa_meishan	ENSSSCP00040025532	100	100	sus_scrofa_pietrain	ENSSSCP00055004219	100	100
ENSSSCG00040045253	sus_scrofa_meishan	ENSSSCP00040025532	97.8947	96.2406	equus_caballus	ENSECAP00000006879	97.8947	96.2406
ENSSSCG00040045253	sus_scrofa_meishan	ENSSSCP00040025532	100	100	sus_scrofa_largewhite	ENSSSCP00025018963	100	100
ENSSSCG00040045253	sus_scrofa_meishan	ENSSSCP00040025532	98.797	97.2932	bos_taurus	ENSBTAP00000027187	98.797	97.2932
ENSSSCG00040045253	sus_scrofa_meishan	ENSSSCP00040025532	99.8496	99.8496	sus_scrofa_hampshire	ENSSSCP00035018991	99.8496	99.8496
ENSSSCG00040045253	sus_scrofa_meishan	ENSSSCP00040025532	100	100	sus_scrofa_bamei	ENSSSCP00050007511	100	100
ENSSSCG00040045253	sus_scrofa_meishan	ENSSSCP00040025532	100	100	sus_scrofa_landrace	ENSSSCP00045016878	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression