RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00040044321	Gene ID	100153005	Accession	-
Symbol		Alias	-	Full Name	DIS3 like 3'-5' exoribonuclease 2
Status	Confidence	Length	365508 bases	Strand	Plus strand
Position	LUXQ01080393.1 : 812390 - 1177897	RNA binding domain	OB_Dis3 , RNB
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040025601	OB_Dis3	PF17849	4.8e-28	1
ENSSSCP00040025601	RNB	PF00773	8.6e-96	2
ENSSSCP00040025474	OB_Dis3	PF17849	4.8e-28	1
ENSSSCP00040025474	RNB	PF00773	8.7e-96	2
ENSSSCP00040025222	OB_Dis3	PF17849	4.9e-28	1
ENSSSCP00040025222	RNB	PF00773	8.3e-96	2
ENSSSCP00040024951	OB_Dis3	PF17849	5e-28	1
ENSSSCP00040024951	RNB	PF00773	1.1e-73	2
ENSSSCP00040024951	RNB	PF00773	1.1e-73	3
ENSSSCP00040025349	OB_Dis3	PF17849	5.1e-28	1
ENSSSCP00040025349	RNB	PF00773	9.5e-96	2
ENSSSCP00040025139	OB_Dis3	PF17849	5.2e-28	1
ENSSSCP00040025139	RNB	PF00773	9.7e-96	2
ENSSSCP00040025035	OB_Dis3	PF17849	5.3e-28	1
ENSSSCP00040025035	RNB	PF00773	1e-95	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00040059491	6323	847aa	ENSSSCP00040024951
-	ENSSSCT00040059734	3242	914aa	ENSSSCP00040025035
-	ENSSSCT00040059948	3804	889aa	ENSSSCP00040025139
-	ENSSSCT00040060124	2984	831aa	ENSSSCP00040025222
-	ENSSSCT00040060397	6195	883aa	ENSSSCP00040025349
-	ENSSSCT00040060664	3019	849aa	ENSSSCP00040025474
-	ENSSSCT00040060925	7250	844aa	ENSSSCP00040025601

Gene Model

Click here to download ENSSSCG00040044321's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040044321's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040044321	sus_scrofa_meishan	ENSSSCP00040033241	42.6931	26.8267	sus_scrofa_meishan	ENSSSCP00040025035	44.7484	28.1182
ENSSSCG00040044321	sus_scrofa_meishan	ENSSSCP00040018531	37.8558	21.9165	sus_scrofa_meishan	ENSSSCP00040025035	43.6543	25.2735

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040044321	sus_scrofa_meishan	ENSSSCP00040025035	63.4573	63.3479	sus_scrofa_usmarc	ENSSSCP00070014183	100	99.8276
ENSSSCG00040044321	sus_scrofa_meishan	ENSSSCP00040025035	63.4573	63.2385	sus_scrofa_tibetan	ENSSSCP00015023693	100	99.6552
ENSSSCG00040044321	sus_scrofa_meishan	ENSSSCP00040025035	95.9519	95.5142	sus_scrofa	ENSSSCP00000025465	94.0987	93.6695
ENSSSCG00040044321	sus_scrofa_meishan	ENSSSCP00040025035	91.1379	90.1532	sus_scrofa_wuzhishan	ENSSSCP00005035977	94.1243	93.1073
ENSSSCG00040044321	sus_scrofa_meishan	ENSSSCP00040025035	95.733	95.2954	sus_scrofa_berkshire	ENSSSCP00065037987	93.4829	93.0556
ENSSSCG00040044321	sus_scrofa_meishan	ENSSSCP00040025035	92.779	87.965	ovis_aries_rambouillet	ENSOARP00020015010	96.1451	91.1565
ENSSSCG00040044321	sus_scrofa_meishan	ENSSSCP00040025035	95.733	95.2954	sus_scrofa_jinhua	ENSSSCP00060028036	93.4829	93.0556
ENSSSCG00040044321	sus_scrofa_meishan	ENSSSCP00040025035	95.733	95.4048	sus_scrofa_rongchang	ENSSSCP00030026521	93.4829	93.1624
ENSSSCG00040044321	sus_scrofa_meishan	ENSSSCP00040025035	95.733	95.2954	sus_scrofa_pietrain	ENSSSCP00055034125	93.4829	93.0556
ENSSSCG00040044321	sus_scrofa_meishan	ENSSSCP00040025035	87.8556	84.0263	equus_caballus	ENSECAP00000025622	86.9048	83.1169
ENSSSCG00040044321	sus_scrofa_meishan	ENSSSCP00040025035	100	99.6718	sus_scrofa_largewhite	ENSSSCP00025002224	100	99.6718
ENSSSCG00040044321	sus_scrofa_meishan	ENSSSCP00040025035	93.2166	88.512	bos_taurus	ENSBTAP00000037928	96.5986	91.7234
ENSSSCG00040044321	sus_scrofa_meishan	ENSSSCP00040025035	99.8906	99.5624	sus_scrofa_hampshire	ENSSSCP00035039499	99.8906	99.5624
ENSSSCG00040044321	sus_scrofa_meishan	ENSSSCP00040025035	26.477	26.2582	sus_scrofa_bamei	ENSSSCP00050016128	99.1803	98.3607
ENSSSCG00040044321	sus_scrofa_meishan	ENSSSCP00040025035	62.2538	61.9256	sus_scrofa_bamei	ENSSSCP00050023077	99.6497	99.1243
ENSSSCG00040044321	sus_scrofa_meishan	ENSSSCP00040025035	26.477	26.2582	sus_scrofa_landrace	ENSSSCP00045007192	99.1803	98.3607
ENSSSCG00040044321	sus_scrofa_meishan	ENSSSCP00040025035	62.2538	61.9256	sus_scrofa_landrace	ENSSSCP00045027547	99.6497	99.1243

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression