RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00040040653	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	8243 bases	Strand	Minus strand
Position	LUXQ01094124.1 : 151 - 8393	RNA binding domain	G-patch , KOW
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040022714	G-patch	PF01585	5.6e-05	1
ENSSSCP00040022714	KOW	PF00467	4e-06	2
ENSSSCP00040022679	G-patch	PF01585	5.7e-05	1
ENSSSCP00040022679	KOW	PF00467	3.8e-06	2
ENSSSCP00040022643	G-patch	PF01585	6.1e-05	1
ENSSSCP00040022643	KOW	PF00467	4.2e-06	2
ENSSSCP00040022607	G-patch	PF01585	7.4e-05	1
ENSSSCP00040022607	KOW	PF00467	5.3e-06	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00040054347	1611	531aa	ENSSSCP00040022607
-	ENSSSCT00040054440	2023	435aa	ENSSSCP00040022643
-	ENSSSCT00040054542	1924	402aa	ENSSSCP00040022679
-	ENSSSCT00040054655	1359	447aa	ENSSSCP00040022714

Gene Model

Click here to download ENSSSCG00040040653's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040040653's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040040653

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040040653	sus_scrofa_meishan	ENSSSCP00040022607	74.0113	71.3748	sus_scrofa_usmarc	ENSSSCP00070007287	81.1983	78.3058
ENSSSCG00040040653	sus_scrofa_meishan	ENSSSCP00040022607	79.8493	77.5895	sus_scrofa_tibetan	ENSSSCP00015013203	90.2128	87.6596
ENSSSCG00040040653	sus_scrofa_meishan	ENSSSCP00040022607	79.8493	77.5895	sus_scrofa	ENSSSCP00000029649	90.2128	87.6596
ENSSSCG00040040653	sus_scrofa_meishan	ENSSSCP00040022607	82.2976	80.0377	sus_scrofa_wuzhishan	ENSSSCP00005032190	85.0195	82.6848
ENSSSCG00040040653	sus_scrofa_meishan	ENSSSCP00040022607	82.2976	80.0377	sus_scrofa_berkshire	ENSSSCP00065049256	90.8524	88.3576
ENSSSCG00040040653	sus_scrofa_meishan	ENSSSCP00040022607	75.8945	69.4915	ovis_aries_rambouillet	ENSOARP00020020751	84.3096	77.1967
ENSSSCG00040040653	sus_scrofa_meishan	ENSSSCP00040022607	82.2976	80.0377	sus_scrofa_jinhua	ENSSSCP00060048740	90.8524	88.3576
ENSSSCG00040040653	sus_scrofa_meishan	ENSSSCP00040022607	79.8493	77.5895	sus_scrofa_rongchang	ENSSSCP00030038101	90.2128	87.6596
ENSSSCG00040040653	sus_scrofa_meishan	ENSSSCP00040022607	82.2976	80.0377	sus_scrofa_pietrain	ENSSSCP00055004664	90.8524	88.3576
ENSSSCG00040040653	sus_scrofa_meishan	ENSSSCP00040022607	72.3164	65.3484	equus_caballus	ENSECAP00000024631	73.2824	66.2214
ENSSSCG00040040653	sus_scrofa_meishan	ENSSSCP00040022607	82.2976	80.0377	sus_scrofa_largewhite	ENSSSCP00025045812	90.8524	88.3576
ENSSSCG00040040653	sus_scrofa_meishan	ENSSSCP00040022607	76.4595	70.0565	bos_taurus	ENSBTAP00000059401	84.5833	77.5
ENSSSCG00040040653	sus_scrofa_meishan	ENSSSCP00040022607	82.2976	80.0377	sus_scrofa_hampshire	ENSSSCP00035036454	90.8524	88.3576
ENSSSCG00040040653	sus_scrofa_meishan	ENSSSCP00040022607	79.8493	77.5895	sus_scrofa_bamei	ENSSSCP00050032336	90.2128	87.6596
ENSSSCG00040040653	sus_scrofa_meishan	ENSSSCP00040022607	82.2976	80.0377	sus_scrofa_landrace	ENSSSCP00045010321	85.0195	82.6848

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression