RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00040039638	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	38609 bases	Strand	Plus strand
Position	LUXQ01084355.1 : 52345 - 90953	RNA binding domain	TUDOR
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040022102	TUDOR	PF00567	7.4e-50	1
ENSSSCP00040022102	TUDOR	PF00567	7.4e-50	2
ENSSSCP00040022102	TUDOR	PF00567	7.4e-50	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00040053129	1994	605aa	ENSSSCP00040022102

Gene Model

Click here to download ENSSSCG00040039638's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040039638's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040039638

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040039638	sus_scrofa_meishan	ENSSSCP00040022102	100	100	sus_scrofa_usmarc	ENSSSCP00070022963	37.3457	37.3457
ENSSSCG00040039638	sus_scrofa_meishan	ENSSSCP00040022102	100	99.8347	sus_scrofa_tibetan	ENSSSCP00015031535	95.7279	95.5696
ENSSSCG00040039638	sus_scrofa_meishan	ENSSSCP00040022102	99.6694	99.6694	sus_scrofa	ENSSSCP00000027213	37.5467	37.5467
ENSSSCG00040039638	sus_scrofa_meishan	ENSSSCP00040022102	0	0	sus_scrofa_wuzhishan	ENSSSCP00005017202	0	0
ENSSSCG00040039638	sus_scrofa_meishan	ENSSSCP00040022102	100	100	sus_scrofa_wuzhishan	ENSSSCP00005017311	100	100
ENSSSCG00040039638	sus_scrofa_meishan	ENSSSCP00040022102	100	100	sus_scrofa_jinhua	ENSSSCP00060018554	100	100
ENSSSCG00040039638	sus_scrofa_meishan	ENSSSCP00040022102	100	100	sus_scrofa_rongchang	ENSSSCP00030023324	38.7324	38.7324
ENSSSCG00040039638	sus_scrofa_meishan	ENSSSCP00040022102	99.8347	99.8347	sus_scrofa_pietrain	ENSSSCP00055004707	99.8347	99.8347
ENSSSCG00040039638	sus_scrofa_meishan	ENSSSCP00040022102	91.7355	86.1157	equus_caballus	ENSECAP00000077293	33.3534	31.3101
ENSSSCG00040039638	sus_scrofa_meishan	ENSSSCP00040022102	100	100	sus_scrofa_largewhite	ENSSSCP00025018463	100	100
ENSSSCG00040039638	sus_scrofa_meishan	ENSSSCP00040022102	93.2231	86.9421	bos_taurus	ENSBTAP00000000345	89.2405	83.2279
ENSSSCG00040039638	sus_scrofa_meishan	ENSSSCP00040022102	99.8347	99.8347	sus_scrofa_hampshire	ENSSSCP00035003400	99.8347	99.8347
ENSSSCG00040039638	sus_scrofa_meishan	ENSSSCP00040022102	100	100	sus_scrofa_bamei	ENSSSCP00050043236	100	100
ENSSSCG00040039638	sus_scrofa_meishan	ENSSSCP00040022102	100	100	sus_scrofa_landrace	ENSSSCP00045035478	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression