RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00040039009	Gene ID	100518772	Accession	-
Symbol	AKAP8	Alias	-	Full Name	A-kinase anchoring protein 8
Status	Confidence	Length	19579 bases	Strand	Minus strand
Position	LUXQ01098188.1 : 267041 - 286619	RNA binding domain	AKAP95
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040021648	AKAP95	PF04988	6.2e-56	1
ENSSSCP00040021696	AKAP95	PF04988	7e-56	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
AKAP8-201	ENSSSCT00040052161	5439	665aa	ENSSSCP00040021648
AKAP8-202	ENSSSCT00040052270	3783	708aa	ENSSSCP00040021696

Gene Model

Click here to download ENSSSCG00040039009's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040039009's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040039009	sus_scrofa_meishan	ENSSSCP00040022216	49.9208	32.9636	sus_scrofa_meishan	ENSSSCP00040021696	44.4915	29.3785
ENSSSCG00040039009	sus_scrofa_meishan	ENSSSCP00040037068	44.1536	27.9232	sus_scrofa_meishan	ENSSSCP00040021696	35.7345	22.5989

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040039009	sus_scrofa_meishan	ENSSSCP00040021696	76.1299	75.565	sus_scrofa_usmarc	ENSSSCP00070042300	90.2848	89.6147
ENSSSCG00040039009	sus_scrofa_meishan	ENSSSCP00040021696	97.4576	97.3164	sus_scrofa_tibetan	ENSSSCP00015012664	100	99.8551
ENSSSCG00040039009	sus_scrofa_meishan	ENSSSCP00040021696	90.678	90.678	sus_scrofa	ENSSSCP00000014710	100	100
ENSSSCG00040039009	sus_scrofa_meishan	ENSSSCP00040021696	100	99.8588	sus_scrofa_wuzhishan	ENSSSCP00005039004	100	99.8588
ENSSSCG00040039009	sus_scrofa_meishan	ENSSSCP00040021696	96.7514	96.7514	sus_scrofa_berkshire	ENSSSCP00065002488	99.564	99.564
ENSSSCG00040039009	sus_scrofa_meishan	ENSSSCP00040021696	89.4068	85.5932	ovis_aries_rambouillet	ENSOARP00020004623	92.8152	88.8563
ENSSSCG00040039009	sus_scrofa_meishan	ENSSSCP00040021696	98.1638	98.1638	sus_scrofa_jinhua	ENSSSCP00060038006	100	100
ENSSSCG00040039009	sus_scrofa_meishan	ENSSSCP00040021696	96.7514	96.6102	sus_scrofa_rongchang	ENSSSCP00030040308	99.564	99.4186
ENSSSCG00040039009	sus_scrofa_meishan	ENSSSCP00040021696	100	100	sus_scrofa_pietrain	ENSSSCP00055010171	100	100
ENSSSCG00040039009	sus_scrofa_meishan	ENSSSCP00040021696	96.7514	96.7514	sus_scrofa_largewhite	ENSSSCP00025038501	99.564	99.564
ENSSSCG00040039009	sus_scrofa_meishan	ENSSSCP00040021696	100	100	sus_scrofa_hampshire	ENSSSCP00035041114	100	100
ENSSSCG00040039009	sus_scrofa_meishan	ENSSSCP00040021696	96.6102	96.4689	sus_scrofa_bamei	ENSSSCP00050006485	99.4186	99.2733
ENSSSCG00040039009	sus_scrofa_meishan	ENSSSCP00040021696	96.7514	96.7514	sus_scrofa_landrace	ENSSSCP00045045866	99.564	99.564

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression