RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00040029943	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	37848 bases	Strand	Minus strand
Position	LUXQ01030941.1 : 289224 - 327071	RNA binding domain	HABP4_PAI-RBP1 , IHABP4_N
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040016891	HABP4_PAI-RBP1	PF04774	1.8e-19	1
ENSSSCP00040016891	IHABP4_N	PF16174	5.8e-69	2
ENSSSCP00040016891	IHABP4_N	PF16174	5.8e-69	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00040040251	2751	431aa	ENSSSCP00040016891

Gene Model

Click here to download ENSSSCG00040029943's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040029943's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040029943	sus_scrofa_meishan	ENSSSCP00040027746	57.2482	44.9631	sus_scrofa_meishan	ENSSSCP00040016891	54.0603	42.4594

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040029943	sus_scrofa_meishan	ENSSSCP00040016891	96.9838	96.9838	sus_scrofa_tibetan	ENSSSCP00015014285	100	100
ENSSSCG00040029943	sus_scrofa_meishan	ENSSSCP00040016891	96.9838	96.9838	sus_scrofa	ENSSSCP00000046537	100	100
ENSSSCG00040029943	sus_scrofa_meishan	ENSSSCP00040016891	96.9838	96.9838	sus_scrofa_berkshire	ENSSSCP00065007604	100	100
ENSSSCG00040029943	sus_scrofa_meishan	ENSSSCP00040016891	93.5035	90.7193	ovis_aries_rambouillet	ENSOARP00020002605	96.6427	93.765
ENSSSCG00040029943	sus_scrofa_meishan	ENSSSCP00040016891	100	100	sus_scrofa_jinhua	ENSSSCP00060001888	100	100
ENSSSCG00040029943	sus_scrofa_meishan	ENSSSCP00040016891	96.9838	96.9838	sus_scrofa_rongchang	ENSSSCP00030002592	100	100
ENSSSCG00040029943	sus_scrofa_meishan	ENSSSCP00040016891	96.9838	96.9838	sus_scrofa_pietrain	ENSSSCP00055001218	100	100
ENSSSCG00040029943	sus_scrofa_meishan	ENSSSCP00040016891	90.4872	87.239	equus_caballus	ENSECAP00000027640	92.6366	89.3112
ENSSSCG00040029943	sus_scrofa_meishan	ENSSSCP00040016891	96.9838	96.9838	sus_scrofa_largewhite	ENSSSCP00025009326	100	100
ENSSSCG00040029943	sus_scrofa_meishan	ENSSSCP00040016891	92.3434	90.0232	bos_taurus	ENSBTAP00000015392	95.4436	93.0456
ENSSSCG00040029943	sus_scrofa_meishan	ENSSSCP00040016891	96.9838	96.9838	sus_scrofa_hampshire	ENSSSCP00035048018	100	100
ENSSSCG00040029943	sus_scrofa_meishan	ENSSSCP00040016891	96.7517	96.7517	sus_scrofa_bamei	ENSSSCP00050017899	99.7608	99.7608
ENSSSCG00040029943	sus_scrofa_meishan	ENSSSCP00040016891	96.9838	96.9838	sus_scrofa_landrace	ENSSSCP00045015908	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression