RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00040028860	Gene ID	396703	Accession	-
Symbol		Alias	-	Full Name	SON DNA binding protein
Status	Confidence	Length	32491 bases	Strand	Minus strand
Position	LUXQ01044989.1 : 2310225 - 2342715	RNA binding domain	G-patch , DND1_DSRM , dsrm
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040016329	G-patch	PF01585	4.2e-16	1
ENSSSCP00040016329	DND1_DSRM	PF14709	6.6e-09	2
ENSSSCP00040016234	G-patch	PF01585	2.4e-15	1
ENSSSCP00040016234	DND1_DSRM	PF14709	3.2e-12	2
ENSSSCP00040016234	dsrm	PF00035	9.7e-07	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00040038780	8963	2440aa	ENSSSCP00040016234
-	ENSSSCT00040038889	9125	2300aa	ENSSSCP00040016289
-	ENSSSCT00040038927	9095	2290aa	ENSSSCP00040016308
-	ENSSSCT00040038993	1404	453aa	ENSSSCP00040016329
-	ENSSSCT00040039016	7455	2284aa	ENSSSCP00040016341
-	ENSSSCT00040039071	7828	2089aa	ENSSSCP00040016365

Gene Model

Click here to download ENSSSCG00040028860's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040028860's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040028860

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040028860	sus_scrofa_meishan	ENSSSCP00040016234	98.1967	97.8689	sus_scrofa_usmarc	ENSSSCP00070021298	98.8449	98.5149
ENSSSCG00040028860	sus_scrofa_meishan	ENSSSCP00040016234	95.8607	95.8197	sus_scrofa_tibetan	ENSSSCP00015027102	99.6591	99.6165
ENSSSCG00040028860	sus_scrofa_meishan	ENSSSCP00040016234	99.8771	99.6311	sus_scrofa	ENSSSCP00000073557	99.186	98.9418
ENSSSCG00040028860	sus_scrofa_meishan	ENSSSCP00040016234	97.8279	97.7869	sus_scrofa_wuzhishan	ENSSSCP00005021523	99.8745	99.8326
ENSSSCG00040028860	sus_scrofa_meishan	ENSSSCP00040016234	97.418	97.2951	sus_scrofa_berkshire	ENSSSCP00065021214	99.6228	99.4971
ENSSSCG00040028860	sus_scrofa_meishan	ENSSSCP00040016234	93.4016	90.7787	ovis_aries_rambouillet	ENSOARP00020007903	94.1736	91.5289
ENSSSCG00040028860	sus_scrofa_meishan	ENSSSCP00040016234	98.1557	97.7869	sus_scrofa_jinhua	ENSSSCP00060017512	93.0458	92.6962
ENSSSCG00040028860	sus_scrofa_meishan	ENSSSCP00040016234	97.541	97.541	sus_scrofa_rongchang	ENSSSCP00030002839	99.7067	99.7067
ENSSSCG00040028860	sus_scrofa_meishan	ENSSSCP00040016234	97.0492	96.9262	sus_scrofa_pietrain	ENSSSCP00055035113	99.6633	99.537
ENSSSCG00040028860	sus_scrofa_meishan	ENSSSCP00040016234	90.041	87.5	equus_caballus	ENSECAP00000015914	94.6167	91.9466
ENSSSCG00040028860	sus_scrofa_meishan	ENSSSCP00040016234	99.7951	99.3852	sus_scrofa_largewhite	ENSSSCP00025017021	97.9091	97.507
ENSSSCG00040028860	sus_scrofa_meishan	ENSSSCP00040016234	88.6475	86.2295	bos_taurus	ENSBTAP00000065970	93.1926	90.6506
ENSSSCG00040028860	sus_scrofa_meishan	ENSSSCP00040016234	99.0984	98.8934	sus_scrofa_hampshire	ENSSSCP00035021656	99.6292	99.4232
ENSSSCG00040028860	sus_scrofa_meishan	ENSSSCP00040016234	97.8279	97.8279	sus_scrofa_bamei	ENSSSCP00050013761	99.5828	99.5828
ENSSSCG00040028860	sus_scrofa_meishan	ENSSSCP00040016234	98.1557	97.7459	sus_scrofa_landrace	ENSSSCP00045031467	92.7216	92.3345

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression