RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00040027566	Gene ID		Accession	-
Symbol	RBM17	Alias	-	Full Name	NA
Status	Confidence	Length	23308 bases	Strand	Plus strand
Position	LUXQ01055001.1 : 687365 - 710672	RNA binding domain	G-patch , RRM_1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040015352	G-patch	PF01585	8.6e-13	1
ENSSSCP00040015352	RRM_1	PF00076	0.00012	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
RBM17-201	ENSSSCT00040036918	3214	401aa	ENSSSCP00040015352

Gene Model

Click here to download ENSSSCG00040027566's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040027566's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040027566

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040027566	sus_scrofa_meishan	ENSSSCP00040015352	100	100	sus_scrofa_usmarc	ENSSSCP00070011015	100	100
ENSSSCG00040027566	sus_scrofa_meishan	ENSSSCP00040015352	100	100	sus_scrofa_tibetan	ENSSSCP00015009923	100	100
ENSSSCG00040027566	sus_scrofa_meishan	ENSSSCP00040015352	100	100	sus_scrofa	ENSSSCP00000011874	100	100
ENSSSCG00040027566	sus_scrofa_meishan	ENSSSCP00040015352	66.3342	66.0848	sus_scrofa_wuzhishan	ENSSSCP00005016539	100	99.6241
ENSSSCG00040027566	sus_scrofa_meishan	ENSSSCP00040015352	100	100	sus_scrofa_berkshire	ENSSSCP00065043262	100	100
ENSSSCG00040027566	sus_scrofa_meishan	ENSSSCP00040015352	100	99.7506	ovis_aries_rambouillet	ENSOARP00020004606	100	99.7506
ENSSSCG00040027566	sus_scrofa_meishan	ENSSSCP00040015352	100	100	sus_scrofa_jinhua	ENSSSCP00060033084	100	100
ENSSSCG00040027566	sus_scrofa_meishan	ENSSSCP00040015352	100	100	sus_scrofa_rongchang	ENSSSCP00030041716	100	100
ENSSSCG00040027566	sus_scrofa_meishan	ENSSSCP00040015352	100	100	sus_scrofa_pietrain	ENSSSCP00055047395	100	100
ENSSSCG00040027566	sus_scrofa_meishan	ENSSSCP00040015352	93.7656	91.7706	equus_caballus	ENSECAP00000063472	89.3112	87.4109
ENSSSCG00040027566	sus_scrofa_meishan	ENSSSCP00040015352	100	100	sus_scrofa_largewhite	ENSSSCP00025012083	100	100
ENSSSCG00040027566	sus_scrofa_meishan	ENSSSCP00040015352	100	99.7506	bos_taurus	ENSBTAP00000029268	100	99.7506
ENSSSCG00040027566	sus_scrofa_meishan	ENSSSCP00040015352	99.2519	98.2544	bos_taurus	ENSBTAP00000067814	99.2519	98.2544
ENSSSCG00040027566	sus_scrofa_meishan	ENSSSCP00040015352	100	100	sus_scrofa_hampshire	ENSSSCP00035022955	100	100
ENSSSCG00040027566	sus_scrofa_meishan	ENSSSCP00040015352	100	100	sus_scrofa_bamei	ENSSSCP00050012772	100	100
ENSSSCG00040027566	sus_scrofa_meishan	ENSSSCP00040015352	100	100	sus_scrofa_landrace	ENSSSCP00045028475	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression