RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00040020437	Gene ID		Accession	-
Symbol	CCAR1	Alias	-	Full Name	NA
Status	Confidence	Length	67534 bases	Strand	Minus strand
Position	LUXQ01042338.1 : 878289 - 945822	RNA binding domain	SAP , S1-like
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040011678	SAP	PF02037	3.3e-08	1
ENSSSCP00040011678	S1-like	PF14444	1.4e-34	2
ENSSSCP00040011626	SAP	PF02037	3.5e-08	1
ENSSSCP00040011626	S1-like	PF14444	1.4e-34	2
ENSSSCP00040011669	SAP	PF02037	3.6e-08	1
ENSSSCP00040011669	S1-like	PF14444	1.5e-34	2
ENSSSCP00040011693	SAP	PF02037	3.6e-08	1
ENSSSCP00040011693	S1-like	PF14444	1.5e-34	2
ENSSSCP00040011610	S1-like	PF14444	5.8e-35	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
CCAR1-201	ENSSSCT00040027559	4403	568aa	ENSSSCP00040011610
CCAR1-202	ENSSSCT00040027592	4854	1093aa	ENSSSCP00040011626
CCAR1-203	ENSSSCT00040027683	3947	1139aa	ENSSSCP00040011669
CCAR1-204	ENSSSCT00040027701	3673	1063aa	ENSSSCP00040011678
CCAR1-205	ENSSSCT00040027740	3614	1152aa	ENSSSCP00040011693

Gene Model

Click here to download ENSSSCG00040020437's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040020437's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040020437	sus_scrofa_meishan	ENSSSCP00040033774	55.9563	36.5027	sus_scrofa_meishan	ENSSSCP00040011693	44.4444	28.9931

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040020437	sus_scrofa_meishan	ENSSSCP00040011693	100	100	sus_scrofa_usmarc	ENSSSCP00070016461	100	100
ENSSSCG00040020437	sus_scrofa_meishan	ENSSSCP00040011693	100	100	sus_scrofa_tibetan	ENSSSCP00015000841	100	100
ENSSSCG00040020437	sus_scrofa_meishan	ENSSSCP00040011693	100	99.9132	sus_scrofa	ENSSSCP00000010920	100	99.9132
ENSSSCG00040020437	sus_scrofa_meishan	ENSSSCP00040011693	100	100	sus_scrofa_wuzhishan	ENSSSCP00005011642	100	100
ENSSSCG00040020437	sus_scrofa_meishan	ENSSSCP00040011693	100	100	sus_scrofa_berkshire	ENSSSCP00065041553	100	100
ENSSSCG00040020437	sus_scrofa_meishan	ENSSSCP00040011693	98.9583	98.3507	ovis_aries_rambouillet	ENSOARP00020012001	99.2167	98.6075
ENSSSCG00040020437	sus_scrofa_meishan	ENSSSCP00040011693	100	100	sus_scrofa_jinhua	ENSSSCP00060009401	100	100
ENSSSCG00040020437	sus_scrofa_meishan	ENSSSCP00040011693	100	100	sus_scrofa_rongchang	ENSSSCP00030015617	100	100
ENSSSCG00040020437	sus_scrofa_meishan	ENSSSCP00040011693	100	100	sus_scrofa_pietrain	ENSSSCP00055043829	100	100
ENSSSCG00040020437	sus_scrofa_meishan	ENSSSCP00040011693	99.1319	98.3507	equus_caballus	ENSECAP00000014412	99.3043	98.5217
ENSSSCG00040020437	sus_scrofa_meishan	ENSSSCP00040011693	100	100	sus_scrofa_largewhite	ENSSSCP00025048787	100	100
ENSSSCG00040020437	sus_scrofa_meishan	ENSSSCP00040011693	98.0035	97.3958	bos_taurus	ENSBTAP00000050465	99.2091	98.594
ENSSSCG00040020437	sus_scrofa_meishan	ENSSSCP00040011693	100	100	sus_scrofa_hampshire	ENSSSCP00035016115	100	100
ENSSSCG00040020437	sus_scrofa_meishan	ENSSSCP00040011693	100	100	sus_scrofa_bamei	ENSSSCP00050016568	100	100
ENSSSCG00040020437	sus_scrofa_meishan	ENSSSCP00040011693	100	99.9132	sus_scrofa_landrace	ENSSSCP00045026353	100	99.9132

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression