RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00040016403	Gene ID		Accession	-
Symbol	TFIP11	Alias	-	Full Name	Tuftelin-interacting protein 11
Status	Confidence	Length	17412 bases	Strand	Plus strand
Position	LUXQ01026247.1 : 1333863 - 1351274	RNA binding domain	G-patch
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040009223	G-patch	PF01585	3.8e-16	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
TFIP11-201	ENSSSCT00040022063	3317	836aa	ENSSSCP00040009223

Gene Model

Click here to download ENSSSCG00040016403's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040016403's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040016403	sus_scrofa_meishan	ENSSSCP00040025586	30.3944	16.2413	sus_scrofa_meishan	ENSSSCP00040009223	15.6699	8.37321
ENSSSCG00040016403	sus_scrofa_meishan	ENSSSCP00040025693	25.3968	12.8571	sus_scrofa_meishan	ENSSSCP00040009223	19.1388	9.689

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040016403	sus_scrofa_meishan	ENSSSCP00040009223	100	100	sus_scrofa_usmarc	ENSSSCP00070001957	100	100
ENSSSCG00040016403	sus_scrofa_meishan	ENSSSCP00040009223	100	99.8804	sus_scrofa_tibetan	ENSSSCP00015010974	100	99.8804
ENSSSCG00040016403	sus_scrofa_meishan	ENSSSCP00040009223	100	100	sus_scrofa	ENSSSCP00000010632	100	100
ENSSSCG00040016403	sus_scrofa_meishan	ENSSSCP00040009223	100	100	sus_scrofa_wuzhishan	ENSSSCP00005025280	100	100
ENSSSCG00040016403	sus_scrofa_meishan	ENSSSCP00040009223	100	100	sus_scrofa_berkshire	ENSSSCP00065009228	100	100
ENSSSCG00040016403	sus_scrofa_meishan	ENSSSCP00040009223	97.9665	94.4976	ovis_aries_rambouillet	ENSOARP00020008123	97.8495	94.3847
ENSSSCG00040016403	sus_scrofa_meishan	ENSSSCP00040009223	100	100	sus_scrofa_jinhua	ENSSSCP00060032738	100	100
ENSSSCG00040016403	sus_scrofa_meishan	ENSSSCP00040009223	100	100	sus_scrofa_rongchang	ENSSSCP00030023134	100	100
ENSSSCG00040016403	sus_scrofa_meishan	ENSSSCP00040009223	100	100	sus_scrofa_pietrain	ENSSSCP00055035011	100	100
ENSSSCG00040016403	sus_scrofa_meishan	ENSSSCP00040009223	91.2679	87.6794	equus_caballus	ENSECAP00000003323	94.9005	91.1692
ENSSSCG00040016403	sus_scrofa_meishan	ENSSSCP00040009223	99.4019	97.1292	equus_caballus	ENSECAP00000013805	99.2832	97.0131
ENSSSCG00040016403	sus_scrofa_meishan	ENSSSCP00040009223	100	100	sus_scrofa_largewhite	ENSSSCP00025025312	100	100
ENSSSCG00040016403	sus_scrofa_meishan	ENSSSCP00040009223	98.3254	94.6172	bos_taurus	ENSBTAP00000016296	98.2079	94.5042
ENSSSCG00040016403	sus_scrofa_meishan	ENSSSCP00040009223	100	100	sus_scrofa_hampshire	ENSSSCP00035018124	100	100
ENSSSCG00040016403	sus_scrofa_meishan	ENSSSCP00040009223	100	100	sus_scrofa_bamei	ENSSSCP00050003792	100	100
ENSSSCG00040016403	sus_scrofa_meishan	ENSSSCP00040009223	100	100	sus_scrofa_landrace	ENSSSCP00045019314	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression