| RBP Type |
N.A. |
| Diseases |
|
| Drug |
|
| Main interacting RNAs |
|
| Moonlighting functions |
|
| Localizations |
|
|
BulkPerturb-seq
|
|
| Ensembl ID | ENSSSCG00040016339 | Gene ID |
100157083 |
Accession |
- |
| Symbol |
CHD7 |
Alias |
- |
Full Name |
chromodomain helicase DNA binding protein 7 |
| Status |
Confidence |
Length |
183154 bases |
Strand |
Plus strand |
| Position |
LUXQ01014050.1 : 791822 - 974975 |
RNA binding domain |
ResIII , BRK |
| Summary |
N.A. |
RNA binding domains (RBDs)
| Protein |
Domain |
Pfam ID |
E-value |
Domain number |
| ENSSSCP00040009190 |
ResIII |
PF04851 |
4.6e-06 |
1 |
| ENSSSCP00040009190 |
BRK |
PF07533 |
3.8e-36 |
2 |
| ENSSSCP00040009190 |
BRK |
PF07533 |
3.8e-36 |
3 |
| ENSSSCP00040009198 |
BRK |
PF07533 |
1.8e-19 |
1 |
RNA binding proteomes (RBPomes)
| Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
| Pubmed ID |
Title |
Author |
Time |
Journal |
| Name |
Transcript ID |
bp |
Protein |
Translation ID |
| CHD7-201 |
ENSSSCT00040022004 |
9560 |
2983aa |
ENSSSCP00040009190 |
| CHD7-202 |
ENSSSCT00040022022 |
3437 |
942aa |
ENSSSCP00040009198 |
| Pathway ID |
Pathway Name |
Source |
| | |
| ensgID |
Trait |
pValue |
Pubmed ID |
| ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
|---|
Protein-Protein Interaction (PPI)
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040048763 | 39.7473 | 24.1982 | sus_scrofa_meishan | ENSSSCP00040009190 | 13.711 | 8.3473 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040036086 | 21.1426 | 10.0917 | sus_scrofa_meishan | ENSSSCP00040009190 | 16.9963 | 8.11264 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040017749 | 32.4781 | 18.1634 | sus_scrofa_meishan | ENSSSCP00040009190 | 16.1247 | 9.01777 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040041202 | 28.869 | 15.377 | sus_scrofa_meishan | ENSSSCP00040009190 | 9.75528 | 5.19611 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040002359 | 34.5477 | 20.765 | sus_scrofa_meishan | ENSSSCP00040009190 | 19.0748 | 11.465 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040013864 | 39.3904 | 23.095 | sus_scrofa_meishan | ENSSSCP00040009190 | 22.5277 | 13.2082 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040023506 | 66.0541 | 52.0458 | sus_scrofa_meishan | ENSSSCP00040009190 | 63.8619 | 50.3185 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040026469 | 37.084 | 21.3946 | sus_scrofa_meishan | ENSSSCP00040009190 | 7.84445 | 4.52565 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040048640 | 39.2236 | 23.0254 | sus_scrofa_meishan | ENSSSCP00040009190 | 9.82233 | 5.76601 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040017217 | 28.6437 | 16.2955 | sus_scrofa_meishan | ENSSSCP00040009190 | 9.48709 | 5.39725 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040022428 | 37.8508 | 21.7322 | sus_scrofa_meishan | ENSSSCP00040009190 | 15.823 | 9.08481 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040044365 | 38.1838 | 22.7571 | sus_scrofa_meishan | ENSSSCP00040009190 | 23.3993 | 13.9457 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040007589 | 23.9589 | 13.8994 | sus_scrofa_meishan | ENSSSCP00040009190 | 14.8508 | 8.61549 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040010190 | 49.1989 | 30.6315 | sus_scrofa_meishan | ENSSSCP00040009190 | 17.4992 | 10.8951 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040029923 | 30.0248 | 17.5558 | sus_scrofa_meishan | ENSSSCP00040009190 | 16.2253 | 9.48709 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040008525 | 48.0287 | 29.6296 | sus_scrofa_meishan | ENSSSCP00040009190 | 13.4764 | 8.31378 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040036943 | 39.3721 | 24.6526 | sus_scrofa_meishan | ENSSSCP00040009190 | 25.6453 | 16.0577 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040025996 | 47.6138 | 30.8546 | sus_scrofa_meishan | ENSSSCP00040009190 | 14.3815 | 9.31948 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040045652 | 19.8799 | 12.2314 | sus_scrofa_meishan | ENSSSCP00040009190 | 21.0862 | 12.9735 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040009418 | 34.2912 | 21.0728 | sus_scrofa_meishan | ENSSSCP00040009190 | 18.002 | 11.0627 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040031711 | 34.0479 | 20.8701 | sus_scrofa_meishan | ENSSSCP00040009190 | 18.1026 | 11.0962 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040007952 | 38.7194 | 24.6623 | sus_scrofa_meishan | ENSSSCP00040009190 | 25.947 | 16.527 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040030178 | 28.0446 | 13.4648 | sus_scrofa_meishan | ENSSSCP00040009190 | 10.9621 | 5.26316 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040030957 | 20.536 | 11.3431 | sus_scrofa_meishan | ENSSSCP00040009190 | 22.0919 | 12.2025 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040016532 | 38.2723 | 23.5602 | sus_scrofa_meishan | ENSSSCP00040009190 | 24.5055 | 15.0855 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040018119 | 17.0515 | 8.99941 | sus_scrofa_meishan | ENSSSCP00040009190 | 9.65471 | 5.09554 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040046079 | 49.7507 | 31.6052 | sus_scrofa_meishan | ENSSSCP00040009190 | 16.7281 | 10.6269 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040032620 | 63.0747 | 49.0622 | sus_scrofa_meishan | ENSSSCP00040009190 | 57.4925 | 44.7201 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040004828 | 63.9629 | 50.6373 | sus_scrofa_meishan | ENSSSCP00040009190 | 55.5146 | 43.949 |
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040009190 | 37.6131 | 37.6131 | sus_scrofa_usmarc | ENSSSCP00070001793 | 99.292 | 99.292 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040009190 | 100 | 100 | sus_scrofa_tibetan | ENSSSCP00015009883 | 100 | 100 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040009190 | 100 | 100 | sus_scrofa | ENSSSCP00000006643 | 100 | 100 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040009190 | 95.5749 | 95.5749 | sus_scrofa_wuzhishan | ENSSSCP00005007719 | 95.9287 | 95.9287 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040009190 | 100 | 100 | sus_scrofa_berkshire | ENSSSCP00065026187 | 100 | 100 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040009190 | 96.6812 | 94.0999 | ovis_aries_rambouillet | ENSOARP00020033450 | 96.4226 | 93.8482 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040009190 | 100 | 100 | sus_scrofa_jinhua | ENSSSCP00060042576 | 100 | 100 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040009190 | 100 | 100 | sus_scrofa_rongchang | ENSSSCP00030024109 | 100 | 100 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040009190 | 100 | 100 | sus_scrofa_pietrain | ENSSSCP00055018621 | 100 | 100 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040009190 | 96.8823 | 94.6028 | equus_caballus | ENSECAP00000002443 | 96.4942 | 94.2237 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040009190 | 100 | 100 | sus_scrofa_largewhite | ENSSSCP00025029534 | 100 | 100 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040009190 | 90.1777 | 87.7305 | bos_taurus | ENSBTAP00000026607 | 96.5542 | 93.934 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040009190 | 100 | 100 | sus_scrofa_hampshire | ENSSSCP00035018326 | 100 | 100 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040009190 | 100 | 100 | sus_scrofa_bamei | ENSSSCP00050025882 | 100 | 100 |
| ENSSSCG00040016339 | sus_scrofa_meishan | ENSSSCP00040009190 | 100 | 100 | sus_scrofa_landrace | ENSSSCP00045000947 | 100 | 100 |
| Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |
