RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | ENSSSCG00040015935 | Gene ID |
|
Accession |
- |
Symbol |
|
Alias |
- |
Full Name |
Sus scrofa tRNA methyltransferase 1 (TRMT1), mRNA. |
Status |
Confidence |
Length |
9196 bases |
Strand |
Minus strand |
Position |
LUXQ01021081.1 : 844489 - 853684 |
RNA binding domain |
Met_10 , zf-CCCH , TRM |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
ENSSSCP00040008983 |
Met_10 |
PF02475 |
1.6e-06 |
1 |
ENSSSCP00040008983 |
zf-CCCH |
PF00642 |
1.7e-06 |
2 |
ENSSSCP00040008983 |
TRM |
PF02005 |
1.4e-150 |
3 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
- |
ENSSSCT00040021502 |
2146 |
660aa |
ENSSSCP00040008983 |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
ENSSSCG00040015935 | sus_scrofa_meishan | ENSSSCP00040026281 | 29.2593 | 15.4321 | sus_scrofa_meishan | ENSSSCP00040008983 | 35.9091 | 18.9394 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
ENSSSCG00040015935 | sus_scrofa_meishan | ENSSSCP00040008983 | 94.0909 | 94.0909 | sus_scrofa_usmarc | ENSSSCP00070008948 | 96.729 | 96.729 |
ENSSSCG00040015935 | sus_scrofa_meishan | ENSSSCP00040008983 | 100 | 100 | sus_scrofa_tibetan | ENSSSCP00015020915 | 100 | 100 |
ENSSSCG00040015935 | sus_scrofa_meishan | ENSSSCP00040008983 | 100 | 100 | sus_scrofa | ENSSSCP00000014613 | 100 | 100 |
ENSSSCG00040015935 | sus_scrofa_meishan | ENSSSCP00040008983 | 99.8485 | 99.8485 | sus_scrofa_wuzhishan | ENSSSCP00005046435 | 99.8485 | 99.8485 |
ENSSSCG00040015935 | sus_scrofa_meishan | ENSSSCP00040008983 | 100 | 100 | sus_scrofa_berkshire | ENSSSCP00065037174 | 100 | 100 |
ENSSSCG00040015935 | sus_scrofa_meishan | ENSSSCP00040008983 | 90.4545 | 86.9697 | ovis_aries_rambouillet | ENSOARP00020010683 | 77.6333 | 74.6424 |
ENSSSCG00040015935 | sus_scrofa_meishan | ENSSSCP00040008983 | 96.2121 | 96.2121 | sus_scrofa_jinhua | ENSSSCP00060010188 | 100 | 100 |
ENSSSCG00040015935 | sus_scrofa_meishan | ENSSSCP00040008983 | 100 | 100 | sus_scrofa_rongchang | ENSSSCP00030005919 | 100 | 100 |
ENSSSCG00040015935 | sus_scrofa_meishan | ENSSSCP00040008983 | 100 | 100 | sus_scrofa_pietrain | ENSSSCP00055033562 | 100 | 100 |
ENSSSCG00040015935 | sus_scrofa_meishan | ENSSSCP00040008983 | 94.5455 | 89.697 | equus_caballus | ENSECAP00000013901 | 94.2598 | 89.426 |
ENSSSCG00040015935 | sus_scrofa_meishan | ENSSSCP00040008983 | 100 | 100 | sus_scrofa_largewhite | ENSSSCP00025035564 | 100 | 100 |
ENSSSCG00040015935 | sus_scrofa_meishan | ENSSSCP00040008983 | 93.7879 | 90.6061 | bos_taurus | ENSBTAP00000025736 | 88.0512 | 85.064 |
ENSSSCG00040015935 | sus_scrofa_meishan | ENSSSCP00040008983 | 100 | 100 | sus_scrofa_hampshire | ENSSSCP00035048935 | 100 | 100 |
ENSSSCG00040015935 | sus_scrofa_meishan | ENSSSCP00040008983 | 100 | 100 | sus_scrofa_bamei | ENSSSCP00050036544 | 100 | 100 |
ENSSSCG00040015935 | sus_scrofa_meishan | ENSSSCP00040008983 | 100 | 100 | sus_scrofa_landrace | ENSSSCP00045027924 | 100 | 100 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |