Description

Ensembl ID ENSSSCG00040015935 Gene ID Accession -
Symbol Alias - Full Name Sus scrofa tRNA methyltransferase 1 (TRMT1), mRNA.
Status Confidence Length 9196 bases Strand Minus strand
Position LUXQ01021081.1 : 844489 - 853684 RNA binding domain Met_10 , zf-CCCH , TRM
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSSSCP00040008983 Met_10 PF02475 1.6e-06 1
ENSSSCP00040008983 zf-CCCH PF00642 1.7e-06 2
ENSSSCP00040008983 TRM PF02005 1.4e-150 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSSSCT00040021502 2146 660aa ENSSSCP00040008983

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00040015935sus_scrofa_meishanENSSSCP0004002628129.259315.4321sus_scrofa_meishanENSSSCP0004000898335.909118.9394

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00040015935sus_scrofa_meishanENSSSCP0004000898394.090994.0909sus_scrofa_usmarcENSSSCP0007000894896.72996.729
ENSSSCG00040015935sus_scrofa_meishanENSSSCP00040008983100100sus_scrofa_tibetanENSSSCP00015020915100100
ENSSSCG00040015935sus_scrofa_meishanENSSSCP00040008983100100sus_scrofaENSSSCP00000014613100100
ENSSSCG00040015935sus_scrofa_meishanENSSSCP0004000898399.848599.8485sus_scrofa_wuzhishanENSSSCP0000504643599.848599.8485
ENSSSCG00040015935sus_scrofa_meishanENSSSCP00040008983100100sus_scrofa_berkshireENSSSCP00065037174100100
ENSSSCG00040015935sus_scrofa_meishanENSSSCP0004000898390.454586.9697ovis_aries_rambouilletENSOARP0002001068377.633374.6424
ENSSSCG00040015935sus_scrofa_meishanENSSSCP0004000898396.212196.2121sus_scrofa_jinhuaENSSSCP00060010188100100
ENSSSCG00040015935sus_scrofa_meishanENSSSCP00040008983100100sus_scrofa_rongchangENSSSCP00030005919100100
ENSSSCG00040015935sus_scrofa_meishanENSSSCP00040008983100100sus_scrofa_pietrainENSSSCP00055033562100100
ENSSSCG00040015935sus_scrofa_meishanENSSSCP0004000898394.545589.697equus_caballusENSECAP0000001390194.259889.426
ENSSSCG00040015935sus_scrofa_meishanENSSSCP00040008983100100sus_scrofa_largewhiteENSSSCP00025035564100100
ENSSSCG00040015935sus_scrofa_meishanENSSSCP0004000898393.787990.6061bos_taurusENSBTAP0000002573688.051285.064
ENSSSCG00040015935sus_scrofa_meishanENSSSCP00040008983100100sus_scrofa_hampshireENSSSCP00035048935100100
ENSSSCG00040015935sus_scrofa_meishanENSSSCP00040008983100100sus_scrofa_bameiENSSSCP00050036544100100
ENSSSCG00040015935sus_scrofa_meishanENSSSCP00040008983100100sus_scrofa_landraceENSSSCP00045027924100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression