| RBP Type |
N.A. |
| Diseases |
|
| Drug |
|
| Main interacting RNAs |
|
| Moonlighting functions |
|
| Localizations |
|
|
BulkPerturb-seq
|
|
| Ensembl ID | ENSSSCG00040014149 | Gene ID |
100188906 |
Accession |
- |
| Symbol |
CHD3 |
Alias |
- |
Full Name |
chromodomain helicase DNA binding protein 3 |
| Status |
Confidence |
Length |
50501 bases |
Strand |
Minus strand |
| Position |
LUXQ01019738.1 : 463082 - 513582 |
RNA binding domain |
ResIII |
| Summary |
N.A. |
RNA binding domains (RBDs)
| Protein |
Domain |
Pfam ID |
E-value |
Domain number |
| ENSSSCP00040007785 |
ResIII |
PF04851 |
2.6e-08 |
1 |
| ENSSSCP00040008132 |
ResIII |
PF04851 |
2.6e-08 |
1 |
| ENSSSCP00040008040 |
ResIII |
PF04851 |
2.8e-08 |
1 |
| ENSSSCP00040008278 |
ResIII |
PF04851 |
2.8e-08 |
1 |
| ENSSSCP00040007985 |
ResIII |
PF04851 |
2.9e-08 |
1 |
| ENSSSCP00040008202 |
ResIII |
PF04851 |
3e-08 |
1 |
| ENSSSCP00040007952 |
ResIII |
PF04851 |
3.2e-08 |
1 |
| ENSSSCP00040008179 |
ResIII |
PF04851 |
4.3e-08 |
1 |
RNA binding proteomes (RBPomes)
| Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
| Pubmed ID |
Title |
Author |
Time |
Journal |
| Name |
Transcript ID |
bp |
Protein |
Translation ID |
| CHD3-206 |
ENSSSCT00040018974 |
8402 |
1709aa |
ENSSSCP00040007785 |
| CHD3-205 |
ENSSSCT00040019266 |
7929 |
1999aa |
ENSSSCP00040007952 |
| CHD3-203 |
ENSSSCT00040019327 |
8876 |
1811aa |
ENSSSCP00040007985 |
| CHD3-204 |
ENSSSCT00040019430 |
8774 |
1777aa |
ENSSSCP00040008040 |
| CHD3-201 |
ENSSSCT00040019581 |
7730 |
1711aa |
ENSSSCP00040008132 |
| CHD3-202 |
ENSSSCT00040019675 |
6779 |
1914aa |
ENSSSCP00040008179 |
| CHD3-207 |
ENSSSCT00040019715 |
6760 |
1830aa |
ENSSSCP00040008202 |
| CHD3-208 |
ENSSSCT00040019882 |
5994 |
1787aa |
ENSSSCP00040008278 |
| Pathway ID |
Pathway Name |
Source |
| | |
| ensgID |
Trait |
pValue |
Pubmed ID |
| ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
|---|
Protein-Protein Interaction (PPI)
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040048763 | 38.1924 | 23.9067 | sus_scrofa_meishan | ENSSSCP00040007952 | 19.6598 | 12.3062 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040036086 | 19.7248 | 9.67473 | sus_scrofa_meishan | ENSSSCP00040007952 | 23.6618 | 11.6058 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040017749 | 30.655 | 18.0959 | sus_scrofa_meishan | ENSSSCP00040007952 | 22.7114 | 13.4067 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040041202 | 26.7857 | 15.2778 | sus_scrofa_meishan | ENSSSCP00040007952 | 13.5068 | 7.70385 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040002359 | 30.4797 | 18.7614 | sus_scrofa_meishan | ENSSSCP00040007952 | 25.1126 | 15.4577 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040013864 | 45.4279 | 28.3118 | sus_scrofa_meishan | ENSSSCP00040007952 | 38.7694 | 24.1621 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040023506 | 26.0402 | 16.3662 | sus_scrofa_meishan | ENSSSCP00040007952 | 37.5688 | 23.6118 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040026469 | 36.1331 | 21.0777 | sus_scrofa_meishan | ENSSSCP00040007952 | 11.4057 | 6.65333 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040048640 | 38.5542 | 22.0884 | sus_scrofa_meishan | ENSSSCP00040007952 | 14.4072 | 8.25413 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040017217 | 28.3401 | 15.8907 | sus_scrofa_meishan | ENSSSCP00040007952 | 14.007 | 7.85393 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040022428 | 31.9968 | 18.6047 | sus_scrofa_meishan | ENSSSCP00040007952 | 19.96 | 11.6058 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040044365 | 42.4508 | 26.5317 | sus_scrofa_meishan | ENSSSCP00040007952 | 38.8194 | 24.2621 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040007589 | 25.311 | 13.3045 | sus_scrofa_meishan | ENSSSCP00040007952 | 23.4117 | 12.3062 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040010190 | 47.1254 | 30.2545 | sus_scrofa_meishan | ENSSSCP00040007952 | 25.0125 | 16.058 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040029923 | 27.5434 | 15.5087 | sus_scrofa_meishan | ENSSSCP00040007952 | 22.2111 | 12.5063 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040009190 | 25.947 | 16.527 | sus_scrofa_meishan | ENSSSCP00040007952 | 38.7194 | 24.6623 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040004828 | 28.2735 | 18.6945 | sus_scrofa_meishan | ENSSSCP00040007952 | 36.6183 | 24.2121 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040008525 | 46.2366 | 28.7933 | sus_scrofa_meishan | ENSSSCP00040007952 | 19.3597 | 12.056 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040036943 | 78.0751 | 68.4509 | sus_scrofa_meishan | ENSSSCP00040007952 | 75.8879 | 66.5333 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040025996 | 48.5017 | 31.9645 | sus_scrofa_meishan | ENSSSCP00040007952 | 21.8609 | 14.4072 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040045652 | 18.2996 | 11.378 | sus_scrofa_meishan | ENSSSCP00040007952 | 28.9645 | 18.009 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040009418 | 35.5683 | 21.5198 | sus_scrofa_meishan | ENSSSCP00040007952 | 27.8639 | 16.8584 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040031711 | 31.652 | 19.1677 | sus_scrofa_meishan | ENSSSCP00040007952 | 25.1126 | 15.2076 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040030178 | 28.3019 | 15.0943 | sus_scrofa_meishan | ENSSSCP00040007952 | 16.5083 | 8.8044 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040030957 | 16.1109 | 8.9436 | sus_scrofa_meishan | ENSSSCP00040007952 | 25.8629 | 14.3572 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040016532 | 79.3717 | 68.8482 | sus_scrofa_meishan | ENSSSCP00040007952 | 75.8379 | 65.7829 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040018119 | 17.1107 | 9.11782 | sus_scrofa_meishan | ENSSSCP00040007952 | 14.4572 | 7.70385 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040046079 | 46.5603 | 30.3091 | sus_scrofa_meishan | ENSSSCP00040007952 | 23.3617 | 15.2076 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040032620 | 26.5539 | 17.4329 | sus_scrofa_meishan | ENSSSCP00040007952 | 36.1181 | 23.7119 |
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040007952 | 97.8989 | 97.8489 | sus_scrofa_usmarc | ENSSSCP00070037250 | 99.1388 | 99.0881 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040007952 | 99.7999 | 99.7499 | sus_scrofa_tibetan | ENSSSCP00015015245 | 99.75 | 99.7 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040007952 | 99.7999 | 99.7999 | sus_scrofa | ENSSSCP00000055609 | 99.9499 | 99.9499 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040007952 | 94.8974 | 94.8474 | sus_scrofa_wuzhishan | ENSSSCP00005038014 | 94.8026 | 94.7526 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040007952 | 96.6483 | 96.5483 | sus_scrofa_berkshire | ENSSSCP00065035997 | 98.6721 | 98.57 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040007952 | 97.8489 | 97.0485 | ovis_aries_rambouillet | ENSOARP00020030748 | 94.9515 | 94.1748 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040007952 | 100 | 99.95 | sus_scrofa_jinhua | ENSSSCP00060035296 | 100 | 99.95 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040007952 | 100 | 99.95 | sus_scrofa_rongchang | ENSSSCP00030048333 | 100 | 99.95 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040007952 | 99.7999 | 99.7999 | sus_scrofa_pietrain | ENSSSCP00055029661 | 99.9499 | 99.9499 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040007952 | 97.6989 | 96.7984 | equus_caballus | ENSECAP00000008810 | 98.0914 | 97.1873 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040007952 | 99.7999 | 99.7999 | sus_scrofa_largewhite | ENSSSCP00025026721 | 99.9499 | 99.9499 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040007952 | 96.4983 | 95.5978 | bos_taurus | ENSBTAP00000064494 | 93.5499 | 92.677 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040007952 | 99.7999 | 99.7999 | sus_scrofa_hampshire | ENSSSCP00035026071 | 99.9499 | 99.9499 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040007952 | 100 | 100 | sus_scrofa_bamei | ENSSSCP00050004901 | 100 | 100 |
| ENSSSCG00040014149 | sus_scrofa_meishan | ENSSSCP00040007952 | 99.7999 | 99.7999 | sus_scrofa_landrace | ENSSSCP00045045535 | 99.9499 | 99.9499 |
| Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |
