RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSSSCG00040014073	Gene ID		Accession	-
Symbol	DDX56	Alias	-	Full Name	Sus scrofa DEAD-box helicase 56 (DDX56), mRNA.
Status	Confidence	Length	9473 bases	Strand	Minus strand
Position	LUXQ01033059.1 : 1425511 - 1434983	RNA binding domain	ResIII , DEAD
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040007722	ResIII	PF04851	2.9e-08	1
ENSSSCP00040007722	DEAD	PF00270	7.1e-39	2
ENSSSCP00040007687	ResIII	PF04851	3.4e-08	1
ENSSSCP00040007687	DEAD	PF00270	8.1e-39	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
DDX56-201	ENSSSCT00040018795	1922	546aa	ENSSSCP00040007687
DDX56-202	ENSSSCT00040018852	1796	504aa	ENSSSCP00040007722

Gene Model

Click here to download ENSSSCG00040014073's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040014073's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040015031	45.8418	28.3976	sus_scrofa_meishan	ENSSSCP00040007687	41.3919	25.641
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040045067	30.6684	18.6107	sus_scrofa_meishan	ENSSSCP00040007687	42.8571	26.0073
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040015243	23.0769	13.7019	sus_scrofa_meishan	ENSSSCP00040007687	35.1648	20.8791
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040035627	13.3436	6.05828	sus_scrofa_meishan	ENSSSCP00040007687	31.8681	14.4689
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040004313	29.6296	16.4609	sus_scrofa_meishan	ENSSSCP00040007687	39.5604	21.978
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040012212	27.0233	15.6379	sus_scrofa_meishan	ENSSSCP00040007687	36.0806	20.8791
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040000799	29.549	16.7963	sus_scrofa_meishan	ENSSSCP00040007687	34.7985	19.7802
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040032822	27.5033	16.6889	sus_scrofa_meishan	ENSSSCP00040007687	37.7289	22.8938
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040034854	27.3364	16.3551	sus_scrofa_meishan	ENSSSCP00040007687	42.8571	25.641
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040002163	33.7037	22.963	sus_scrofa_meishan	ENSSSCP00040007687	33.3333	22.7106
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040011183	26.9133	14.9235	sus_scrofa_meishan	ENSSSCP00040007687	38.6447	21.4286
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040008594	39.1304	21.9462	sus_scrofa_meishan	ENSSSCP00040007687	34.6154	19.4139
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040021561	25.1422	14.6758	sus_scrofa_meishan	ENSSSCP00040007687	40.4762	23.6264
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040044791	31.7666	17.9903	sus_scrofa_meishan	ENSSSCP00040007687	35.8974	20.3297
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040041321	46.1916	27.2727	sus_scrofa_meishan	ENSSSCP00040007687	34.4322	20.3297
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040008095	21.2004	12.3911	sus_scrofa_meishan	ENSSSCP00040007687	40.1099	23.4432
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040011316	30.7937	17.9365	sus_scrofa_meishan	ENSSSCP00040007687	35.5311	20.696
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040006199	36.1781	20.2226	sus_scrofa_meishan	ENSSSCP00040007687	35.7143	19.9634
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040025409	26.5903	16.5394	sus_scrofa_meishan	ENSSSCP00040007687	38.2784	23.8095
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040019812	24.9715	14.8233	sus_scrofa_meishan	ENSSSCP00040007687	40.1099	23.8095
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040019241	36.3333	20.8333	sus_scrofa_meishan	ENSSSCP00040007687	39.9267	22.8938
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040027849	33.4432	18.1219	sus_scrofa_meishan	ENSSSCP00040007687	37.1795	20.1465
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040021180	23.4146	13.5366	sus_scrofa_meishan	ENSSSCP00040007687	35.1648	20.3297
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040011258	29.5393	16.2602	sus_scrofa_meishan	ENSSSCP00040007687	39.9267	21.978
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040026397	21.1477	11.9022	sus_scrofa_meishan	ENSSSCP00040007687	36.4469	20.5128
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040048633	36.8526	19.7211	sus_scrofa_meishan	ENSSSCP00040007687	33.8828	18.1319
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040048566	35.2254	21.202	sus_scrofa_meishan	ENSSSCP00040007687	38.6447	23.2601
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040037621	43.0642	26.087	sus_scrofa_meishan	ENSSSCP00040007687	38.0952	23.0769
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040037886	37.6812	23.6025	sus_scrofa_meishan	ENSSSCP00040007687	33.3333	20.8791
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040016238	29.1101	17.3454	sus_scrofa_meishan	ENSSSCP00040007687	35.348	21.0623
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040032846	47.9319	26.5207	sus_scrofa_meishan	ENSSSCP00040007687	36.0806	19.9634
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040043525	28.3212	15.6204	sus_scrofa_meishan	ENSSSCP00040007687	35.5311	19.5971
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040009966	45.8128	26.601	sus_scrofa_meishan	ENSSSCP00040007687	34.0659	19.7802
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040043035	33.0189	20.9906	sus_scrofa_meishan	ENSSSCP00040007687	25.641	16.3004
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040029124	28.8372	16.5891	sus_scrofa_meishan	ENSSSCP00040007687	34.0659	19.5971
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040043904	41.8224	22.8972	sus_scrofa_meishan	ENSSSCP00040007687	32.7839	17.9487

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040007687	99.6337	99.4505	sus_scrofa_usmarc	ENSSSCP00070026451	100	99.8162
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040007687	100	99.8168	sus_scrofa	ENSSSCP00000017735	100	99.8168
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040007687	100	99.8168	sus_scrofa_wuzhishan	ENSSSCP00005021358	100	99.8168
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040007687	100	99.8168	sus_scrofa_berkshire	ENSSSCP00065037934	100	99.8168
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040007687	96.5201	94.6886	ovis_aries_rambouillet	ENSOARP00020004364	96.5201	94.6886
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040007687	100	99.8168	sus_scrofa_jinhua	ENSSSCP00060008459	100	99.8168
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040007687	100	99.6337	sus_scrofa_rongchang	ENSSSCP00030021640	100	99.6337
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040007687	100	99.8168	sus_scrofa_pietrain	ENSSSCP00055009857	100	99.8168
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040007687	96.5201	94.1392	equus_caballus	ENSECAP00000083879	96.5201	94.1392
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040007687	100	99.8168	sus_scrofa_largewhite	ENSSSCP00025022007	100	99.8168
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040007687	96.8864	95.0549	bos_taurus	ENSBTAP00000014014	96.8864	95.0549
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040007687	100	99.8168	sus_scrofa_hampshire	ENSSSCP00035033292	100	99.8168
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040007687	100	99.8168	sus_scrofa_bamei	ENSSSCP00050021843	100	99.8168
ENSSSCG00040014073	sus_scrofa_meishan	ENSSSCP00040007687	100	99.8168	sus_scrofa_landrace	ENSSSCP00045041870	100	99.8168

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression