RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00040013785	Gene ID		Accession	-
Symbol	TBC1D22B	Alias	-	Full Name	NA
Status	Confidence	Length	230390 bases	Strand	Minus strand
Position	LUXQ01022153.1 : 1470907 - 1701296	RNA binding domain	G-patch , FtsJ
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040007598	G-patch	PF01585	8.9e-13	1
ENSSSCP00040007598	FtsJ	PF01728	8.9e-37	2
ENSSSCP00040007533	G-patch	PF01585	1.5e-12	1
ENSSSCP00040007533	FtsJ	PF01728	1.4e-36	2
ENSSSCP00040007669	G-patch	PF01585	3.6e-09	1
ENSSSCP00040007669	FtsJ	PF01728	3.5e-37	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
TBC1D22B-202	ENSSSCT00040018401	6656	1803aa	ENSSSCP00040007533
TBC1D22B-201	ENSSSCT00040018571	5329	1319aa	ENSSSCP00040007598
TBC1D22B-203	ENSSSCT00040018753	3768	753aa	ENSSSCP00040007669
TBC1D22B-204	ENSSSCT00040018789	5892	508aa	ENSSSCP00040007684
TBC1D22B-205	ENSSSCT00040018832	6098	465aa	ENSSSCP00040007710
TBC1D22B-206	ENSSSCT00040018845	3495	563aa	ENSSSCP00040007716
TBC1D22B-207	ENSSSCT00040018889	3435	544aa	ENSSSCP00040007743

Gene Model

Click here to download ENSSSCG00040013785's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040013785's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040013785	sus_scrofa_meishan	ENSSSCP00040028586	36.3874	18.7173	sus_scrofa_meishan	ENSSSCP00040007533	15.4187	7.93123

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040013785	sus_scrofa_meishan	ENSSSCP00040007533	72.1575	71.6583	sus_scrofa_usmarc	ENSSSCP00070005135	98.6353	97.953
ENSSSCG00040013785	sus_scrofa_meishan	ENSSSCP00040007533	72.1575	71.6583	sus_scrofa_tibetan	ENSSSCP00015026106	98.6353	97.953
ENSSSCG00040013785	sus_scrofa_meishan	ENSSSCP00040007533	46.2562	46.2562	sus_scrofa	ENSSSCP00000001713	100	100
ENSSSCG00040013785	sus_scrofa_meishan	ENSSSCP00040007533	98.3361	98.2806	sus_scrofa_wuzhishan	ENSSSCP00005044098	98.8294	98.7737
ENSSSCG00040013785	sus_scrofa_meishan	ENSSSCP00040007533	100	100	sus_scrofa_berkshire	ENSSSCP00065020837	100	100
ENSSSCG00040013785	sus_scrofa_meishan	ENSSSCP00040007533	45.4798	44.6478	ovis_aries_rambouillet	ENSOARP00020031527	98.2036	96.4072
ENSSSCG00040013785	sus_scrofa_meishan	ENSSSCP00040007533	46.3117	46.3117	sus_scrofa_jinhua	ENSSSCP00060019166	100	100
ENSSSCG00040013785	sus_scrofa_meishan	ENSSSCP00040007533	46.3117	46.3117	sus_scrofa_rongchang	ENSSSCP00030043194	100	100
ENSSSCG00040013785	sus_scrofa_meishan	ENSSSCP00040007533	98.7243	98.6689	sus_scrofa_pietrain	ENSSSCP00055014408	99.6083	99.5523
ENSSSCG00040013785	sus_scrofa_meishan	ENSSSCP00040007533	45.2024	44.5369	equus_caballus	ENSECAP00000045908	98.7879	97.3333
ENSSSCG00040013785	sus_scrofa_meishan	ENSSSCP00040007533	46.3117	46.3117	sus_scrofa_largewhite	ENSSSCP00025004570	100	100
ENSSSCG00040013785	sus_scrofa_meishan	ENSSSCP00040007533	45.4798	44.6478	bos_taurus	ENSBTAP00000022726	98.2036	96.4072
ENSSSCG00040013785	sus_scrofa_meishan	ENSSSCP00040007533	100	100	sus_scrofa_hampshire	ENSSSCP00035001668	100	100
ENSSSCG00040013785	sus_scrofa_meishan	ENSSSCP00040007533	100	100	sus_scrofa_bamei	ENSSSCP00050042752	100	100
ENSSSCG00040013785	sus_scrofa_meishan	ENSSSCP00040007533	100	100	sus_scrofa_landrace	ENSSSCP00045029087	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression