RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00040013350	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	76727 bases	Strand	Minus strand
Position	LUXQ01007790.1 : 4556 - 81282	RNA binding domain	tRNA_anti-codon , tRNA-synt_2
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040007280	tRNA_anti-codon	PF01336	5.3e-08	1
ENSSSCP00040007280	tRNA-synt_2	PF00152	5.7e-79	2
ENSSSCP00040007311	tRNA_anti-codon	PF01336	5.5e-08	1
ENSSSCP00040007311	tRNA-synt_2	PF00152	2.5e-69	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00040017781	2215	468aa	ENSSSCP00040007280
-	ENSSSCT00040017853	4773	482aa	ENSSSCP00040007311

Gene Model

Click here to download ENSSSCG00040013350's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040013350's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040013350	sus_scrofa_meishan	ENSSSCP00040007001	40.0419	22.6415	sus_scrofa_meishan	ENSSSCP00040007311	39.6266	22.4066
ENSSSCG00040013350	sus_scrofa_meishan	ENSSSCP00040011214	35.5993	20.5725	sus_scrofa_meishan	ENSSSCP00040007311	41.2863	23.8589
ENSSSCG00040013350	sus_scrofa_meishan	ENSSSCP00040038272	22.9141	11.3325	sus_scrofa_meishan	ENSSSCP00040007311	38.1743	18.8797
ENSSSCG00040013350	sus_scrofa_meishan	ENSSSCP00040040499	27.8034	15.6682	sus_scrofa_meishan	ENSSSCP00040007311	37.5519	21.1618

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040013350	sus_scrofa_meishan	ENSSSCP00040007311	98.1328	97.5104	sus_scrofa_usmarc	ENSSSCP00070007548	94.4112	93.8124
ENSSSCG00040013350	sus_scrofa_meishan	ENSSSCP00040007311	91.9087	91.4938	sus_scrofa_tibetan	ENSSSCP00015007681	94.2553	93.8298
ENSSSCG00040013350	sus_scrofa_meishan	ENSSSCP00040007311	91.9087	91.2863	sus_scrofa	ENSSSCP00000076715	94.2553	93.617
ENSSSCG00040013350	sus_scrofa_meishan	ENSSSCP00040007311	93.7759	93.1535	sus_scrofa_wuzhishan	ENSSSCP00005036675	93.7759	93.1535
ENSSSCG00040013350	sus_scrofa_meishan	ENSSSCP00040007311	99.7925	99.5851	sus_scrofa_berkshire	ENSSSCP00065007362	99.7925	99.5851
ENSSSCG00040013350	sus_scrofa_meishan	ENSSSCP00040007311	96.888	95.0207	ovis_aries_rambouillet	ENSOARP00020015309	89.9807	88.2466
ENSSSCG00040013350	sus_scrofa_meishan	ENSSSCP00040007311	93.361	92.7386	sus_scrofa_jinhua	ENSSSCP00060044121	94.3396	93.7107
ENSSSCG00040013350	sus_scrofa_meishan	ENSSSCP00040007311	90.8714	90.249	sus_scrofa_rongchang	ENSSSCP00030034010	93.5897	92.9487
ENSSSCG00040013350	sus_scrofa_meishan	ENSSSCP00040007311	90.8714	90.0415	sus_scrofa_pietrain	ENSSSCP00055025111	93.5897	92.735
ENSSSCG00040013350	sus_scrofa_meishan	ENSSSCP00040007311	97.0954	95.2282	equus_caballus	ENSECAP00000040605	88.9734	87.2624
ENSSSCG00040013350	sus_scrofa_meishan	ENSSSCP00040007311	91.0788	90.249	sus_scrofa_largewhite	ENSSSCP00025033545	92.8118	91.9662
ENSSSCG00040013350	sus_scrofa_meishan	ENSSSCP00040007311	92.7386	90.8714	bos_taurus	ENSBTAP00000065619	85.9615	84.2308
ENSSSCG00040013350	sus_scrofa_meishan	ENSSSCP00040007311	91.0788	90.249	sus_scrofa_hampshire	ENSSSCP00035041226	92.8118	91.9662
ENSSSCG00040013350	sus_scrofa_meishan	ENSSSCP00040007311	90.8714	89.2116	sus_scrofa_bamei	ENSSSCP00050000404	90.6832	89.0269
ENSSSCG00040013350	sus_scrofa_meishan	ENSSSCP00040007311	90.8714	90.0415	sus_scrofa_landrace	ENSSSCP00045012939	93.5897	92.735

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression