Description

Ensembl ID ENSSSCG00040012962 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 143250 bases Strand Minus strand
Position LUXQ01024697.1 : 1127089 - 1270338 RNA binding domain tRNA_anti-codon , tRNA-synt_2
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSSSCP00040007035 tRNA_anti-codon PF01336 2.4e-10 1
ENSSSCP00040007035 tRNA-synt_2 PF00152 9.6e-66 2
ENSSSCP00040007038 tRNA_anti-codon PF01336 2.8e-10 1
ENSSSCP00040007038 tRNA-synt_2 PF00152 8.3e-66 2
ENSSSCP00040007009 tRNA_anti-codon PF01336 2.8e-10 1
ENSSSCP00040007009 tRNA-synt_2 PF00152 1.3e-81 2
ENSSSCP00040007009 tRNA-synt_2 PF00152 1.3e-81 3
ENSSSCP00040007020 tRNA_anti-codon PF01336 3.3e-10 1
ENSSSCP00040007020 tRNA-synt_2 PF00152 8.9e-92 2
ENSSSCP00040007001 tRNA_anti-codon PF01336 3.4e-10 1
ENSSSCP00040007001 tRNA-synt_2 PF00152 1.2e-99 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSSSCT00040017218 4308 477aa ENSSSCP00040007001
- ENSSSCT00040017235 2328 431aa ENSSSCP00040007009
- ENSSSCT00040017257 2216 468aa ENSSSCP00040007020
- ENSSSCT00040017293 7144 389aa ENSSSCP00040007035
- ENSSSCT00040017304 1578 424aa ENSSSCP00040007038

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00040012962sus_scrofa_meishanENSSSCP0004000731139.626622.4066sus_scrofa_meishanENSSSCP0004000700140.041922.6415
ENSSSCG00040012962sus_scrofa_meishanENSSSCP0004001121438.819324.5081sus_scrofa_meishanENSSSCP0004000700145.492728.7212
ENSSSCG00040012962sus_scrofa_meishanENSSSCP0004003827220.672510.3362sus_scrofa_meishanENSSSCP0004000700134.800817.4004
ENSSSCG00040012962sus_scrofa_meishanENSSSCP0004004049928.878616.2826sus_scrofa_meishanENSSSCP0004000700139.41322.2222

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00040012962sus_scrofa_meishanENSSSCP0004000700199.580799.1614sus_scrofa_usmarcENSSSCP0007002587899.789999.3698
ENSSSCG00040012962sus_scrofa_meishanENSSSCP0004000700176.939274.2138sus_scrofa_tibetanENSSSCP0001500992083.409180.4545
ENSSSCG00040012962sus_scrofa_meishanENSSSCP0004000700199.580799.3711sus_scrofaENSSSCP0000005230699.580799.3711
ENSSSCG00040012962sus_scrofa_meishanENSSSCP0004000700151.572351.5723sus_scrofa_wuzhishanENSSSCP0000501003199.595199.5951
ENSSSCG00040012962sus_scrofa_meishanENSSSCP0004000700199.790499.5807sus_scrofa_berkshireENSSSCP0006503751899.790499.5807
ENSSSCG00040012962sus_scrofa_meishanENSSSCP0004000700187.421483.8574ovis_aries_rambouilletENSOARP0002003262396.976793.0233
ENSSSCG00040012962sus_scrofa_meishanENSSSCP0004000700199.580799.5807sus_scrofa_jinhuaENSSSCP0006003797199.580799.5807
ENSSSCG00040012962sus_scrofa_meishanENSSSCP0004000700199.580799.3711sus_scrofa_rongchangENSSSCP0003004678599.580799.3711
ENSSSCG00040012962sus_scrofa_meishanENSSSCP0004000700199.790499.5807sus_scrofa_pietrainENSSSCP0005502909599.790499.5807
ENSSSCG00040012962sus_scrofa_meishanENSSSCP0004000700199.580799.3711sus_scrofa_largewhiteENSSSCP0002504350199.580799.3711
ENSSSCG00040012962sus_scrofa_meishanENSSSCP0004000700196.226491.8239bos_taurusENSBTAP0000004891896.226491.8239
ENSSSCG00040012962sus_scrofa_meishanENSSSCP0004000700199.790499.5807sus_scrofa_hampshireENSSSCP0003502405899.790499.5807
ENSSSCG00040012962sus_scrofa_meishanENSSSCP0004000700199.790499.7904sus_scrofa_bameiENSSSCP0005003584099.790499.7904
ENSSSCG00040012962sus_scrofa_meishanENSSSCP0004000700199.371199.1614sus_scrofa_landraceENSSSCP0004504412799.371199.1614

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression