RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00040012919	Gene ID		Accession	-
Symbol	RPA1	Alias	-	Full Name	NA
Status	Confidence	Length	39615 bases	Strand	Minus strand
Position	LUXQ01015864.1 : 983195 - 1022809	RNA binding domain	tRNA_anti-codon
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040006994	tRNA_anti-codon	PF01336	2.8e-12	1
ENSSSCP00040006985	tRNA_anti-codon	PF01336	2.9e-12	1
ENSSSCP00040007016	tRNA_anti-codon	PF01336	5.1e-12	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
RPA1-202	ENSSSCT00040017180	2724	585aa	ENSSSCP00040006985
RPA1-201	ENSSSCT00040017206	2626	578aa	ENSSSCP00040006994
RPA1-203	ENSSSCT00040017250	2191	626aa	ENSSSCP00040007016

Gene Model

Click here to download ENSSSCG00040012919's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040012919's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040012919

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040012919	sus_scrofa_meishan	ENSSSCP00040007016	95.0479	95.0479	sus_scrofa_usmarc	ENSSSCP00070024596	91.3979	91.3979
ENSSSCG00040012919	sus_scrofa_meishan	ENSSSCP00040007016	100	100	sus_scrofa_tibetan	ENSSSCP00015033900	100	100
ENSSSCG00040012919	sus_scrofa_meishan	ENSSSCP00040007016	85.9425	84.984	sus_scrofa	ENSSSCP00000063468	88.3415	87.3563
ENSSSCG00040012919	sus_scrofa_meishan	ENSSSCP00040007016	85.9425	84.984	sus_scrofa_wuzhishan	ENSSSCP00005018855	87.3377	86.3636
ENSSSCG00040012919	sus_scrofa_meishan	ENSSSCP00040007016	100	100	sus_scrofa_berkshire	ENSSSCP00065033252	100	100
ENSSSCG00040012919	sus_scrofa_meishan	ENSSSCP00040007016	83.7061	80.8307	ovis_aries_rambouillet	ENSOARP00020028915	70.4301	68.0107
ENSSSCG00040012919	sus_scrofa_meishan	ENSSSCP00040007016	99.8403	99.8403	sus_scrofa_jinhua	ENSSSCP00060014165	99.8403	99.8403
ENSSSCG00040012919	sus_scrofa_meishan	ENSSSCP00040007016	99.8403	99.8403	sus_scrofa_rongchang	ENSSSCP00030038688	99.8403	99.8403
ENSSSCG00040012919	sus_scrofa_meishan	ENSSSCP00040007016	100	100	sus_scrofa_pietrain	ENSSSCP00055035047	100	100
ENSSSCG00040012919	sus_scrofa_meishan	ENSSSCP00040007016	82.2684	78.9137	equus_caballus	ENSECAP00000021472	82.5321	79.1667
ENSSSCG00040012919	sus_scrofa_meishan	ENSSSCP00040007016	100	100	sus_scrofa_largewhite	ENSSSCP00025044898	100	100
ENSSSCG00040012919	sus_scrofa_meishan	ENSSSCP00040007016	83.3866	80.9904	bos_taurus	ENSBTAP00000012812	84.7403	82.3052
ENSSSCG00040012919	sus_scrofa_meishan	ENSSSCP00040007016	100	100	sus_scrofa_hampshire	ENSSSCP00035031251	100	100
ENSSSCG00040012919	sus_scrofa_meishan	ENSSSCP00040007016	100	100	sus_scrofa_bamei	ENSSSCP00050006810	100	100
ENSSSCG00040012919	sus_scrofa_meishan	ENSSSCP00040007016	100	100	sus_scrofa_landrace	ENSSSCP00045026840	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression