RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00040011747	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	8509 bases	Strand	Minus strand
Position	LUXQ01029290.1 : 140610 - 149118	RNA binding domain	G-patch
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040006052	G-patch	PF01585	1.9e-09	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00040015406	3922	432aa	ENSSSCP00040006052

Gene Model

Click here to download ENSSSCG00040011747's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040011747's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040011747	sus_scrofa_meishan	ENSSSCP00040002974	34.6041	21.4076	sus_scrofa_meishan	ENSSSCP00040006052	27.3148	16.8981

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040011747	sus_scrofa_meishan	ENSSSCP00040006052	99.0741	98.3796	sus_scrofa_usmarc	ENSSSCP00070046753	99.0741	98.3796
ENSSSCG00040011747	sus_scrofa_meishan	ENSSSCP00040006052	98.8426	98.6111	sus_scrofa_tibetan	ENSSSCP00015028097	98.8426	98.6111
ENSSSCG00040011747	sus_scrofa_meishan	ENSSSCP00040006052	99.0741	98.3796	sus_scrofa	ENSSSCP00000006907	99.0741	98.3796
ENSSSCG00040011747	sus_scrofa_meishan	ENSSSCP00040006052	99.0741	98.3796	sus_scrofa_wuzhishan	ENSSSCP00005007873	99.0741	98.3796
ENSSSCG00040011747	sus_scrofa_meishan	ENSSSCP00040006052	99.3056	98.6111	sus_scrofa_berkshire	ENSSSCP00065019772	99.3056	98.6111
ENSSSCG00040011747	sus_scrofa_meishan	ENSSSCP00040006052	69.213	63.1944	ovis_aries_rambouillet	ENSOARP00020034076	82.3691	75.2066
ENSSSCG00040011747	sus_scrofa_meishan	ENSSSCP00040006052	99.3056	98.8426	sus_scrofa_jinhua	ENSSSCP00060017426	99.3056	98.8426
ENSSSCG00040011747	sus_scrofa_meishan	ENSSSCP00040006052	99.7685	99.537	sus_scrofa_rongchang	ENSSSCP00030011181	99.7685	99.537
ENSSSCG00040011747	sus_scrofa_meishan	ENSSSCP00040006052	99.0741	98.3796	sus_scrofa_pietrain	ENSSSCP00055002246	99.0741	98.3796
ENSSSCG00040011747	sus_scrofa_meishan	ENSSSCP00040006052	80.787	74.537	equus_caballus	ENSECAP00000078216	66.3498	61.2167
ENSSSCG00040011747	sus_scrofa_meishan	ENSSSCP00040006052	99.0741	98.3796	sus_scrofa_largewhite	ENSSSCP00025002461	99.0741	98.3796
ENSSSCG00040011747	sus_scrofa_meishan	ENSSSCP00040006052	77.3148	69.6759	bos_taurus	ENSBTAP00000065937	70.3158	63.3684
ENSSSCG00040011747	sus_scrofa_meishan	ENSSSCP00040006052	99.0741	98.3796	sus_scrofa_hampshire	ENSSSCP00035010040	99.0741	98.3796
ENSSSCG00040011747	sus_scrofa_meishan	ENSSSCP00040006052	98.6111	97.9167	sus_scrofa_bamei	ENSSSCP00050007108	98.6111	97.9167
ENSSSCG00040011747	sus_scrofa_meishan	ENSSSCP00040006052	99.0741	98.3796	sus_scrofa_landrace	ENSSSCP00045039814	99.0741	98.3796

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression