RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00040011260	Gene ID		Accession	-
Symbol	PCSK1N	Alias	-	Full Name	NA
Status	Confidence	Length	4537 bases	Strand	Minus strand
Position	LUXQ01027763.1 : 222628 - 227164	RNA binding domain	ProSAAS
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040005753	ProSAAS	PF07259	6.6e-46	1
ENSSSCP00040005748	ProSAAS	PF07259	7.6e-46	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
PCSK1N-201	ENSSSCT00040014730	885	238aa	ENSSSCP00040005748
PCSK1N-202	ENSSSCT00040014741	1037	259aa	ENSSSCP00040005753

Gene Model

Click here to download ENSSSCG00040011260's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040011260's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040011260

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040011260	sus_scrofa_meishan	ENSSSCP00040005753	100	100	sus_scrofa_usmarc	ENSSSCP00070042078	100	100
ENSSSCG00040011260	sus_scrofa_meishan	ENSSSCP00040005753	100	100	sus_scrofa_tibetan	ENSSSCP00015034500	100	100
ENSSSCG00040011260	sus_scrofa_meishan	ENSSSCP00040005753	89.5753	88.0309	sus_scrofa	ENSSSCP00000068857	97.479	95.7983
ENSSSCG00040011260	sus_scrofa_meishan	ENSSSCP00040005753	100	100	sus_scrofa_berkshire	ENSSSCP00065048899	100	100
ENSSSCG00040011260	sus_scrofa_meishan	ENSSSCP00040005753	93.0502	89.5753	ovis_aries_rambouillet	ENSOARP00020024723	79.538	76.5677
ENSSSCG00040011260	sus_scrofa_meishan	ENSSSCP00040005753	100	100	sus_scrofa_jinhua	ENSSSCP00060048811	100	100
ENSSSCG00040011260	sus_scrofa_meishan	ENSSSCP00040005753	100	100	sus_scrofa_rongchang	ENSSSCP00030036360	100	100
ENSSSCG00040011260	sus_scrofa_meishan	ENSSSCP00040005753	100	100	sus_scrofa_pietrain	ENSSSCP00055000734	100	100
ENSSSCG00040011260	sus_scrofa_meishan	ENSSSCP00040005753	94.5946	93.4363	equus_caballus	ENSECAP00000035010	94.2308	93.0769
ENSSSCG00040011260	sus_scrofa_meishan	ENSSSCP00040005753	100	100	sus_scrofa_largewhite	ENSSSCP00025042236	100	100
ENSSSCG00040011260	sus_scrofa_meishan	ENSSSCP00040005753	93.4363	91.1197	bos_taurus	ENSBTAP00000042463	79.868	77.8878
ENSSSCG00040011260	sus_scrofa_meishan	ENSSSCP00040005753	100	99.6139	sus_scrofa_hampshire	ENSSSCP00035039193	100	99.6139
ENSSSCG00040011260	sus_scrofa_meishan	ENSSSCP00040005753	100	100	sus_scrofa_bamei	ENSSSCP00050029335	100	100
ENSSSCG00040011260	sus_scrofa_meishan	ENSSSCP00040005753	100	100	sus_scrofa_landrace	ENSSSCP00045007619	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression