RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00040008961	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	74607 bases	Strand	Plus strand
Position	LUXQ01001959.1 : 65250 - 139856	RNA binding domain	G-patch
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040004399	G-patch	PF01585	7.2e-16	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00040011629	4325	195aa	ENSSSCP00040004399

Gene Model

Click here to download ENSSSCG00040008961's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040008961's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040008961	sus_scrofa_meishan	ENSSSCP00040031298	2.38727	1.06101	sus_scrofa_meishan	ENSSSCP00040004399	4.61538	2.05128
ENSSSCG00040008961	sus_scrofa_meishan	ENSSSCP00040024609	10.4418	6.2249	sus_scrofa_meishan	ENSSSCP00040004399	26.6667	15.8974

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040008961	sus_scrofa_meishan	ENSSSCP00040004399	83.0769	81.0256	sus_scrofa_usmarc	ENSSSCP00070018630	30.6238	29.8677
ENSSSCG00040008961	sus_scrofa_meishan	ENSSSCP00040004399	83.0769	81.0256	sus_scrofa	ENSSSCP00000033752	30.6238	29.8677
ENSSSCG00040008961	sus_scrofa_meishan	ENSSSCP00040004399	83.0769	81.0256	sus_scrofa_berkshire	ENSSSCP00065034306	81.407	79.397
ENSSSCG00040008961	sus_scrofa_meishan	ENSSSCP00040004399	0	0	sus_scrofa_berkshire	ENSSSCP00065034248	0	0
ENSSSCG00040008961	sus_scrofa_meishan	ENSSSCP00040004399	80.5128	74.359	ovis_aries_rambouillet	ENSOARP00020009916	29.6786	27.4102
ENSSSCG00040008961	sus_scrofa_meishan	ENSSSCP00040004399	78.9744	71.7949	equus_caballus	ENSECAP00000056154	29.1667	26.5152
ENSSSCG00040008961	sus_scrofa_meishan	ENSSSCP00040004399	80	73.8462	bos_taurus	ENSBTAP00000064690	29.4896	27.2212

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression