RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	ENSSSCG00040006980	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	12263 bases	Strand	Plus strand
Position	LUXQ01012207.1 : 1019921 - 1032183	RNA binding domain	SURF6
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040003605	SURF6	PF04935	2.9e-38	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00040009204	6160	370aa	ENSSSCP00040003605

Gene Model

Click here to download ENSSSCG00040006980's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040006980's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040006980

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040006980	sus_scrofa_meishan	ENSSSCP00040003605	94.8649	94.8649	sus_scrofa_usmarc	ENSSSCP00070008828	100	100
ENSSSCG00040006980	sus_scrofa_meishan	ENSSSCP00040003605	99.7297	99.7297	sus_scrofa_tibetan	ENSSSCP00015013549	99.7297	99.7297
ENSSSCG00040006980	sus_scrofa_meishan	ENSSSCP00040003605	92.4324	92.4324	sus_scrofa	ENSSSCP00000050881	97.9943	97.9943
ENSSSCG00040006980	sus_scrofa_meishan	ENSSSCP00040003605	100	100	sus_scrofa_berkshire	ENSSSCP00065001822	100	100
ENSSSCG00040006980	sus_scrofa_meishan	ENSSSCP00040003605	82.4324	73.7838	ovis_aries_rambouillet	ENSOARP00020003121	86.6477	77.5568
ENSSSCG00040006980	sus_scrofa_meishan	ENSSSCP00040003605	100	100	sus_scrofa_jinhua	ENSSSCP00060006920	100	100
ENSSSCG00040006980	sus_scrofa_meishan	ENSSSCP00040003605	100	100	sus_scrofa_rongchang	ENSSSCP00030027022	100	100
ENSSSCG00040006980	sus_scrofa_meishan	ENSSSCP00040003605	100	100	sus_scrofa_pietrain	ENSSSCP00055007616	100	100
ENSSSCG00040006980	sus_scrofa_meishan	ENSSSCP00040003605	81.6216	75.9459	equus_caballus	ENSECAP00000018734	84.8315	78.9326
ENSSSCG00040006980	sus_scrofa_meishan	ENSSSCP00040003605	100	100	sus_scrofa_largewhite	ENSSSCP00025016419	100	100
ENSSSCG00040006980	sus_scrofa_meishan	ENSSSCP00040003605	83.2432	75.1351	bos_taurus	ENSBTAP00000015353	87.2521	78.7535
ENSSSCG00040006980	sus_scrofa_meishan	ENSSSCP00040003605	100	99.7297	sus_scrofa_hampshire	ENSSSCP00035032338	100	99.7297
ENSSSCG00040006980	sus_scrofa_meishan	ENSSSCP00040003605	100	100	sus_scrofa_bamei	ENSSSCP00050021186	100	100
ENSSSCG00040006980	sus_scrofa_meishan	ENSSSCP00040003605	100	100	sus_scrofa_landrace	ENSSSCP00045038453	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression