RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00040006900	Gene ID		Accession	-
Symbol	GPATCH11	Alias	-	Full Name	NA
Status	Confidence	Length	13397 bases	Strand	Plus strand
Position	LUXQ01016955.1 : 1217007 - 1230403	RNA binding domain	G-patch
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040003564	G-patch	PF01585	2.5e-13	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
GPATCH11-201	ENSSSCT00040009099	2498	260aa	ENSSSCP00040003564
GPATCH11-202	ENSSSCT00040009106	2008	153aa	ENSSSCP00040003567

Gene Model

Click here to download ENSSSCG00040006900's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040006900's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040006900

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040006900	sus_scrofa_meishan	ENSSSCP00040003564	100	100	sus_scrofa_usmarc	ENSSSCP00070009649	100	100
ENSSSCG00040006900	sus_scrofa_meishan	ENSSSCP00040003564	100	100	sus_scrofa_tibetan	ENSSSCP00015038660	92.8571	92.8571
ENSSSCG00040006900	sus_scrofa_meishan	ENSSSCP00040003564	100	100	sus_scrofa	ENSSSCP00000009063	92.8571	92.8571
ENSSSCG00040006900	sus_scrofa_meishan	ENSSSCP00040003564	100	100	sus_scrofa_wuzhishan	ENSSSCP00005033001	100	100
ENSSSCG00040006900	sus_scrofa_meishan	ENSSSCP00040003564	100	100	sus_scrofa_berkshire	ENSSSCP00065022781	92.8571	92.8571
ENSSSCG00040006900	sus_scrofa_meishan	ENSSSCP00040003564	97.6923	94.2308	ovis_aries_rambouillet	ENSOARP00020001156	96.9466	93.5115
ENSSSCG00040006900	sus_scrofa_meishan	ENSSSCP00040003564	100	100	sus_scrofa_jinhua	ENSSSCP00060033605	100	100
ENSSSCG00040006900	sus_scrofa_meishan	ENSSSCP00040003564	100	100	sus_scrofa_rongchang	ENSSSCP00030001239	100	100
ENSSSCG00040006900	sus_scrofa_meishan	ENSSSCP00040003564	100	100	sus_scrofa_pietrain	ENSSSCP00055017133	100	100
ENSSSCG00040006900	sus_scrofa_meishan	ENSSSCP00040003564	96.9231	94.2308	equus_caballus	ENSECAP00000051605	88.4211	85.9649
ENSSSCG00040006900	sus_scrofa_meishan	ENSSSCP00040003564	100	100	sus_scrofa_largewhite	ENSSSCP00025033984	92.8571	92.8571
ENSSSCG00040006900	sus_scrofa_meishan	ENSSSCP00040003564	98.4615	95	bos_taurus	ENSBTAP00000005037	96.9697	93.5606
ENSSSCG00040006900	sus_scrofa_meishan	ENSSSCP00040003564	100	100	sus_scrofa_hampshire	ENSSSCP00035046288	100	100
ENSSSCG00040006900	sus_scrofa_meishan	ENSSSCP00040003564	100	100	sus_scrofa_bamei	ENSSSCP00050027758	92.8571	92.8571
ENSSSCG00040006900	sus_scrofa_meishan	ENSSSCP00040003564	100	100	sus_scrofa_landrace	ENSSSCP00045021431	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression