RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00040005686	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	72827 bases	Strand	Minus strand
Position	LUXQ01015098.1 : 332636 - 405462	RNA binding domain	G-patch
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040002971	G-patch	PF01585	2e-15	1
ENSSSCP00040002977	G-patch	PF01585	2e-15	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00040007501	1831	312aa	ENSSSCP00040002971
-	ENSSSCT00040007508	1413	341aa	ENSSSCP00040002974
-	ENSSSCT00040007519	1401	313aa	ENSSSCP00040002977

Gene Model

Click here to download ENSSSCG00040005686's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040005686's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040005686	sus_scrofa_meishan	ENSSSCP00040006052	27.3148	16.8981	sus_scrofa_meishan	ENSSSCP00040002974	34.6041	21.4076

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040005686	sus_scrofa_meishan	ENSSSCP00040002974	81.8182	80.6452	sus_scrofa_usmarc	ENSSSCP00070037578	89.4231	88.141
ENSSSCG00040005686	sus_scrofa_meishan	ENSSSCP00040002974	78.0059	76.2463	sus_scrofa_tibetan	ENSSSCP00015038818	86.9281	84.9673
ENSSSCG00040005686	sus_scrofa_meishan	ENSSSCP00040002974	82.4047	80.9384	sus_scrofa	ENSSSCP00000043532	89.7764	88.1789
ENSSSCG00040005686	sus_scrofa_meishan	ENSSSCP00040002974	82.6979	80.9384	sus_scrofa_wuzhishan	ENSSSCP00005002965	90.0958	88.1789
ENSSSCG00040005686	sus_scrofa_meishan	ENSSSCP00040002974	82.6979	81.5249	sus_scrofa_berkshire	ENSSSCP00065027894	90.0958	88.8179
ENSSSCG00040005686	sus_scrofa_meishan	ENSSSCP00040002974	70.088	63.6364	ovis_aries_rambouillet	ENSOARP00020009506	76.8489	69.7749
ENSSSCG00040005686	sus_scrofa_meishan	ENSSSCP00040002974	82.6979	81.5249	sus_scrofa_jinhua	ENSSSCP00060028724	90.0958	88.8179
ENSSSCG00040005686	sus_scrofa_meishan	ENSSSCP00040002974	82.6979	81.2317	sus_scrofa_rongchang	ENSSSCP00030009608	90.0958	88.4984
ENSSSCG00040005686	sus_scrofa_meishan	ENSSSCP00040002974	82.4047	81.2317	sus_scrofa_pietrain	ENSSSCP00055012239	89.7764	88.4984
ENSSSCG00040005686	sus_scrofa_meishan	ENSSSCP00040002974	82.6979	81.2317	sus_scrofa_largewhite	ENSSSCP00025015953	90.0958	88.4984
ENSSSCG00040005686	sus_scrofa_meishan	ENSSSCP00040002974	68.6217	62.7566	bos_taurus	ENSBTAP00000000637	75.7282	69.2557
ENSSSCG00040005686	sus_scrofa_meishan	ENSSSCP00040002974	82.4047	80.9384	sus_scrofa_hampshire	ENSSSCP00035012545	89.7764	88.1789
ENSSSCG00040005686	sus_scrofa_meishan	ENSSSCP00040002974	98.827	98.827	sus_scrofa_bamei	ENSSSCP00050013079	98.827	98.827
ENSSSCG00040005686	sus_scrofa_meishan	ENSSSCP00040002974	82.4047	80.6452	sus_scrofa_landrace	ENSSSCP00045028521	89.7764	87.8594

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression