RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	ENSSSCG00040004575	Gene ID		Accession	-
Symbol	NABP2	Alias	-	Full Name	NA
Status	Confidence	Length	6824 bases	Strand	Plus strand
Position	LUXQ01002043.1 : 573342 - 580165	RNA binding domain	tRNA_anti-codon
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040002399	tRNA_anti-codon	PF01336	2.3e-06	1
ENSSSCP00040002396	tRNA_anti-codon	PF01336	2.8e-06	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
NABP2-201	ENSSSCT00040006089	1423	232aa	ENSSSCP00040002396
NABP2-202	ENSSSCT00040006094	1641	211aa	ENSSSCP00040002399

Gene Model

Click here to download ENSSSCG00040004575's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040004575's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040004575	sus_scrofa_meishan	ENSSSCP00040004033	31.1475	26.2295	sus_scrofa_meishan	ENSSSCP00040002396	57.3276	48.2759

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040004575	sus_scrofa_meishan	ENSSSCP00040002396	100	99.569	sus_scrofa_usmarc	ENSSSCP00070050912	100	99.569
ENSSSCG00040004575	sus_scrofa_meishan	ENSSSCP00040002396	100	100	sus_scrofa_tibetan	ENSSSCP00015040241	100	100
ENSSSCG00040004575	sus_scrofa_meishan	ENSSSCP00040002396	71.5517	67.6724	sus_scrofa	ENSSSCP00000039212	78.673	74.4076
ENSSSCG00040004575	sus_scrofa_meishan	ENSSSCP00040002396	71.5517	67.6724	sus_scrofa_wuzhishan	ENSSSCP00005024549	78.673	74.4076
ENSSSCG00040004575	sus_scrofa_meishan	ENSSSCP00040002396	71.5517	67.6724	sus_scrofa_berkshire	ENSSSCP00065034919	78.673	74.4076
ENSSSCG00040004575	sus_scrofa_meishan	ENSSSCP00040002396	69.8276	66.3793	ovis_aries_rambouillet	ENSOARP00020003731	76.7773	72.9858
ENSSSCG00040004575	sus_scrofa_meishan	ENSSSCP00040002396	100	99.569	sus_scrofa_jinhua	ENSSSCP00060047879	100	99.569
ENSSSCG00040004575	sus_scrofa_meishan	ENSSSCP00040002396	100	99.569	sus_scrofa_rongchang	ENSSSCP00030030791	100	99.569
ENSSSCG00040004575	sus_scrofa_meishan	ENSSSCP00040002396	100	99.569	sus_scrofa_pietrain	ENSSSCP00055007777	100	99.569
ENSSSCG00040004575	sus_scrofa_meishan	ENSSSCP00040002396	62.5	57.7586	equus_caballus	ENSECAP00000036222	61.7021	57.0213
ENSSSCG00040004575	sus_scrofa_meishan	ENSSSCP00040002396	100	99.569	sus_scrofa_largewhite	ENSSSCP00025029859	100	99.569
ENSSSCG00040004575	sus_scrofa_meishan	ENSSSCP00040002396	69.3966	65.0862	bos_taurus	ENSBTAP00000041786	76.3033	71.564
ENSSSCG00040004575	sus_scrofa_meishan	ENSSSCP00040002396	100	100	sus_scrofa_hampshire	ENSSSCP00035005210	100	100
ENSSSCG00040004575	sus_scrofa_meishan	ENSSSCP00040002396	100	100	sus_scrofa_bamei	ENSSSCP00050046389	100	100
ENSSSCG00040004575	sus_scrofa_meishan	ENSSSCP00040002396	100	99.569	sus_scrofa_landrace	ENSSSCP00045025775	100	99.569

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression