RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00040004368	Gene ID	100156892	Accession	-
Symbol	ZMAT5	Alias	-	Full Name	zinc finger matrin-type 5
Status	Confidence	Length	24604 bases	Strand	Minus strand
Position	LUXQ01015433.1 : 857545 - 882148	RNA binding domain	zf-CCCH , zf-U1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040002205	zf-CCCH	PF00642	7.9e-08	1
ENSSSCP00040002205	zf-U1	PF06220	4.8e-07	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
ZMAT5-201	ENSSSCT00040005764	903	170aa	ENSSSCP00040002205

Gene Model

Click here to download ENSSSCG00040004368's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040004368's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040004368

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040004368	sus_scrofa_meishan	ENSSSCP00040002205	100	100	sus_scrofa_usmarc	ENSSSCP00070039247	100	100
ENSSSCG00040004368	sus_scrofa_meishan	ENSSSCP00040002205	100	100	sus_scrofa_tibetan	ENSSSCP00015033482	100	100
ENSSSCG00040004368	sus_scrofa_meishan	ENSSSCP00040002205	100	99.4118	sus_scrofa	ENSSSCP00000049710	100	99.4118
ENSSSCG00040004368	sus_scrofa_meishan	ENSSSCP00040002205	84.7059	82.9412	sus_scrofa_wuzhishan	ENSSSCP00005023843	71.6418	70.1493
ENSSSCG00040004368	sus_scrofa_meishan	ENSSSCP00040002205	100	100	sus_scrofa_berkshire	ENSSSCP00065049441	100	100
ENSSSCG00040004368	sus_scrofa_meishan	ENSSSCP00040002205	95.8824	92.3529	ovis_aries_rambouillet	ENSOARP00020017505	95.8824	92.3529
ENSSSCG00040004368	sus_scrofa_meishan	ENSSSCP00040002205	100	100	sus_scrofa_jinhua	ENSSSCP00060046851	100	100
ENSSSCG00040004368	sus_scrofa_meishan	ENSSSCP00040002205	100	100	sus_scrofa_rongchang	ENSSSCP00030026336	100	100
ENSSSCG00040004368	sus_scrofa_meishan	ENSSSCP00040002205	100	100	sus_scrofa_pietrain	ENSSSCP00055044982	100	100
ENSSSCG00040004368	sus_scrofa_meishan	ENSSSCP00040002205	68.2353	62.9412	equus_caballus	ENSECAP00000084077	45.1362	41.6342
ENSSSCG00040004368	sus_scrofa_meishan	ENSSSCP00040002205	100	100	sus_scrofa_largewhite	ENSSSCP00025030237	100	100
ENSSSCG00040004368	sus_scrofa_meishan	ENSSSCP00040002205	80	78.8235	bos_taurus	ENSBTAP00000074278	57.6271	56.7797
ENSSSCG00040004368	sus_scrofa_meishan	ENSSSCP00040002205	100	99.4118	sus_scrofa_hampshire	ENSSSCP00035009105	100	99.4118
ENSSSCG00040004368	sus_scrofa_meishan	ENSSSCP00040002205	100	100	sus_scrofa_bamei	ENSSSCP00050048179	100	100
ENSSSCG00040004368	sus_scrofa_meishan	ENSSSCP00040002205	100	100	sus_scrofa_landrace	ENSSSCP00045038988	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression