RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00040003821	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	16402 bases	Strand	Plus strand
Position	LUXQ01009905.1 : 1732847 - 1749248	RNA binding domain	TUDOR
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040001598	TUDOR	PF00567	1.5e-154	1
ENSSSCP00040001598	TUDOR	PF00567	1.5e-154	2
ENSSSCP00040001598	TUDOR	PF00567	1.5e-154	3
ENSSSCP00040001598	TUDOR	PF00567	1.5e-154	4
ENSSSCP00040001598	TUDOR	PF00567	1.5e-154	5
ENSSSCP00040001598	TUDOR	PF00567	1.5e-154	6
ENSSSCP00040001598	TUDOR	PF00567	1.5e-154	7
ENSSSCP00040001607	TUDOR	PF00567	2.5e-154	1
ENSSSCP00040001607	TUDOR	PF00567	2.5e-154	2
ENSSSCP00040001607	TUDOR	PF00567	2.5e-154	3
ENSSSCP00040001607	TUDOR	PF00567	2.5e-154	4
ENSSSCP00040001607	TUDOR	PF00567	2.5e-154	5
ENSSSCP00040001607	TUDOR	PF00567	2.5e-154	6
ENSSSCP00040001607	TUDOR	PF00567	2.5e-154	7
ENSSSCP00040001609	TUDOR	PF00567	8.9e-153	1
ENSSSCP00040001609	TUDOR	PF00567	8.9e-153	2
ENSSSCP00040001609	TUDOR	PF00567	8.9e-153	3
ENSSSCP00040001609	TUDOR	PF00567	8.9e-153	4
ENSSSCP00040001609	TUDOR	PF00567	8.9e-153	5
ENSSSCP00040001609	TUDOR	PF00567	8.9e-153	6
ENSSSCP00040001609	TUDOR	PF00567	8.9e-153	7

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00040004822	6885	2040aa	ENSSSCP00040001598
-	ENSSSCT00040004843	6306	2101aa	ENSSSCP00040001607
-	ENSSSCT00040004847	6216	2071aa	ENSSSCP00040001609

Gene Model

Click here to download ENSSSCG00040003821's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040003821's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040003821	sus_scrofa_meishan	ENSSSCP00040027253	23.5294	11.0897	sus_scrofa_meishan	ENSSSCP00040001607	11.6135	5.47358
ENSSSCG00040003821	sus_scrofa_meishan	ENSSSCP00040040996	36.7021	20.4787	sus_scrofa_meishan	ENSSSCP00040001607	6.5683	3.66492
ENSSSCG00040003821	sus_scrofa_meishan	ENSSSCP00040043749	36.3481	18.8567	sus_scrofa_meishan	ENSSSCP00040001607	20.2761	10.5188
ENSSSCG00040003821	sus_scrofa_meishan	ENSSSCP00040045738	24.3863	13.0933	sus_scrofa_meishan	ENSSSCP00040001607	7.09186	3.80771
ENSSSCG00040003821	sus_scrofa_meishan	ENSSSCP00040029257	29.8725	14.3898	sus_scrofa_meishan	ENSSSCP00040001607	15.6116	7.52023

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040003821	sus_scrofa_meishan	ENSSSCP00040001607	99.8572	99.762	sus_scrofa_tibetan	ENSSSCP00015006284	99.8572	99.762
ENSSSCG00040003821	sus_scrofa_meishan	ENSSSCP00040001607	99.3336	99.0957	sus_scrofa	ENSSSCP00000020457	98.7695	98.5329
ENSSSCG00040003821	sus_scrofa_meishan	ENSSSCP00040001607	98.0485	97.763	sus_scrofa_berkshire	ENSSSCP00065033174	98.3763	98.0898
ENSSSCG00040003821	sus_scrofa_meishan	ENSSSCP00040001607	100	100	sus_scrofa_jinhua	ENSSSCP00060012521	100	100
ENSSSCG00040003821	sus_scrofa_meishan	ENSSSCP00040001607	99.9524	99.9048	sus_scrofa_rongchang	ENSSSCP00030014473	99.9524	99.9048
ENSSSCG00040003821	sus_scrofa_meishan	ENSSSCP00040001607	98.5245	98.3341	sus_scrofa_pietrain	ENSSSCP00055025227	99.9517	99.7586
ENSSSCG00040003821	sus_scrofa_meishan	ENSSSCP00040001607	88.8148	80.9138	equus_caballus	ENSECAP00000023303	87.688	79.8872
ENSSSCG00040003821	sus_scrofa_meishan	ENSSSCP00040001607	99.9048	99.8572	sus_scrofa_largewhite	ENSSSCP00025021372	99.9048	99.8572
ENSSSCG00040003821	sus_scrofa_meishan	ENSSSCP00040001607	87.1014	78.7244	bos_taurus	ENSBTAP00000013158	87.4761	79.0631
ENSSSCG00040003821	sus_scrofa_meishan	ENSSSCP00040001607	99.9524	99.9524	sus_scrofa_hampshire	ENSSSCP00035047763	99.9524	99.9524
ENSSSCG00040003821	sus_scrofa_meishan	ENSSSCP00040001607	98.0485	97.763	sus_scrofa_bamei	ENSSSCP00050001620	98.3763	98.0898
ENSSSCG00040003821	sus_scrofa_meishan	ENSSSCP00040001607	98.5245	98.3341	sus_scrofa_landrace	ENSSSCP00045021513	99.9517	99.7586

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression